PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G248100.1.p
Common NameGLYMA_20G248100, LOC100819319
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 287aa    MW: 31021.6 Da    PI: 8.8844
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G248100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.53.8e-11220265655
                          HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Glyma.20G248100.1.p 220 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 265
                          689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005214264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.16E-15217279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.13E-11218269No hitNo description
Gene3DG3DSA:4.10.280.103.5E-14219278IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8220265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.4E-13220270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MYPSSSSSSS SSSQSMTQAG LTRYGSAPGS LLTSTVDSLI GGSRPSPYFS GESSESPCKE  60
QRSFHNHPPS FASSLLRQKS SPAGFLSHLS NHHGVGFTIT PGGLSNSNSN SNCSLLKSQL  120
SFTHESLSNT VNVDPSSTTF GMDPWDNNSI AFSATSTKRS KTNTNDPDIL HSLNSALESQ  180
FNLPHTSLEM STVDKLLHIP EDSVPCKIRA KRGCATHPRS IAERERRTRI SGKLKKLQDL  240
VPNMDKQTSY ADMLDLAVQH IKGLQTQVQK LHKEMENCTC GCKQSK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.23890.0cotyledon| hypocotyl| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G248100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556577.10.0transcription factor bHLH128
SwissprotQ8H1022e-67BH128_ARATH; Transcription factor bHLH128
TrEMBLI1NJD60.0I1NJD6_SOYBN; Uncharacterized protein
STRINGGLYMA20G39220.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76803140
Representative plantOGRP5111580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.12e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]