PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G247500.1.p
Common NameGLYMA_20G247500, LOC100818781
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 298aa    MW: 31539.6 Da    PI: 9.6164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G247500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09101126227
                          -S---SGGGGTS--TTTTT-SS-SSS CS
              zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                          kt+lC+ f     Ck+Gd+C+FaHg+
  Glyma.20G247500.1.p 101 KTRLCNKFNTAEGCKFGDKCHFAHGE 126
                          8***********************96 PP
2zf-CCCH36.21e-11264288126
                          --S---SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                          +kt+lC +fa+ G C +G+rC+FaHg
  Glyma.20G247500.1.p 264 FKTKLCENFAK-GSCTFGERCHFAHG 288
                          69*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423361IPR000571Zinc finger, CCCH-type
SMARTSM003561.73360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-63459IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-73558IPR000571Zinc finger, CCCH-type
PfamPF146081.84158No hitNo description
SuperFamilySSF902292.09E-897130IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-1497130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.206100127IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6101126IPR000571Zinc finger, CCCH-type
SMARTSM003560.0074101126IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.55E-15162241IPR004088K Homology domain, type 1
SMARTSM003222.0E-10170240IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.103.0E-15171241IPR004088K Homology domain, type 1
PROSITE profilePS5008413.795171235IPR004088K Homology domain, type 1
PfamPF000139.0E-11173237IPR004088K Homology domain, type 1
CDDcd001052.13E-13175236No hitNo description
Gene3DG3DSA:4.10.1000.107.7E-16260294IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-9262293IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868263290IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7263289IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9264288IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDRKRGRPEA AFNFNGGAKK SRPETDSFPT GLGSKSKPCT KFFSTSGCPF GEGCHFLHYV  60
PGGFKAVSQL INVGSNPVTP QVGRNPVPPS FPDGSSPPVV KTRLCNKFNT AEGCKFGDKC  120
HFAHGEWELG RPTAPSYEDP RVLGQMPSSR VGGRVEPPHP AHGAAASFGA SATAKISINA  180
SLAGAVIGKN GVNSKQICRV TGAKLSIRDH DTDPNLRNIE LEGSFDQIKQ ASAMVHEVIL  240
NVSSASGPPM KSFTSQTSAP TSNFKTKLCE NFAKGSCTFG ERCHFAHGTD ELRKSGM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.515980.0cotyledon| hypocotyl| leaf| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G247500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943710.0BT094371.1 Soybean clone JCVI-FLGm-18H5 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240135.10.0uncharacterized protein LOC100818781
RefseqXP_028221907.10.0zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-117C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A445FA530.0A0A445FA53_GLYSO; Zinc finger CCCH domain-containing protein 14 isoform A
TrEMBLC6TA410.0C6TA41_SOYBN; Uncharacterized protein
STRINGGLYMA20G39160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-53C3H family protein