PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G228500.1.p
Common NameGLYMA_20G228500, LOC100817182
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GeBP
Protein Properties Length: 354aa    MW: 39647.1 Da    PI: 4.3821
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G228500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573119.91.3e-3791186297
               DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                          lfqrlw++eDei lLqG+++++a++g+s ++d+  fy+++k+++++ ++k+qlveK+rrLKkK+++  +k++sgke+sf+++hd+ +fe+
  Glyma.20G228500.1.p  91 LFQRLWTDEDEIGLLQGFLEYTAQRGSSHHNDTALFYDQIKSKLQLGFNKNQLVEKLRRLKKKYRNVLNKISSGKEVSFKSPHDRATFEI 180
                          79**************************************************************************************** PP

               DUF573  92 skkiWg 97 
                          s++iW 
  Glyma.20G228500.1.p 181 SRRIWS 186
                          *****6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-3492186IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MESDLNDAVF PEEDLDDDDE TPEDEEEEED DDVLDDDETE PPPSVIAVAP PASETLDTAL  60
IPISSVADSS PKPLRTELIE EKKALDDSRR LFQRLWTDED EIGLLQGFLE YTAQRGSSHH  120
NDTALFYDQI KSKLQLGFNK NQLVEKLRRL KKKYRNVLNK ISSGKEVSFK SPHDRATFEI  180
SRRIWSNTAP ITGPVEDDDE IITNPNFGNS AKMPISRKRS RPQKRELNDG STLNRDNNCN  240
SNSNNNNNNE NCNSRLNLQG LIEETVRSCV SPVLKELACG TGGMGLGRGF ALNPLQMPMP  300
MSLMNLGIVG ETAMDEKWRK QQILELEVYS KRLELVQNEI KVALEELRSA GGG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.590590.0cotyledon| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G228500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-161AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556486.10.0probable transcription factor At5g28040
RefseqXP_028222838.10.0probable transcription factor At5g28040
SwissprotF4K5T42e-87STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLI1NIU10.0I1NIU1_SOYBN; Uncharacterized protein
STRINGGLYMA20G37240.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32553365
Representative plantOGRP31841028
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.12e-83DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]