PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G228300.1.p

Common Name

GLYMA_20G228300, LOC102659511

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

GeBP

Protein Properties

Length: 358aa MW: 41056.9 Da PI: 4.6845

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G228300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	80.4	2.8e-25	109	206	2	97
DUF573 2 lfqrlwseeDeivlLqGlidf..kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 + qrlw++eDe+ lL+G +d+ ++++++ + + +y+ v+ ++++ ++k+qlveK+rrLK+K k +k +++ke+ f+++++q i Glyma.20G228300.1.p 109 QYQRLWTKEDEMELLKGYLDYvkRHRKETTTLQsVVASLYDHVRPKLNVSFNKNQLVEKLRRLKRKHKLALDK-DKDKEVPFRNPQEQAI 197 579****************63333444444448899*******************************.99********** PP DUF573 89 felskkiWg 97 fe+s+kiWg Glyma.20G228300.1.p 198 FEISHKIWG 206 ******8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.8E-25	111	206	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MLSPLVSWIL SPSSSSSSSE EEEEEILDII TDNDINHEND QKLNVEDDEC DVDNTIPVAL 60 AVPNASPAVT VAFPANDERN TIPVTATATT VVTCSKGQRN AKYSGMVRQY QRLWTKEDEM 120 ELLKGYLDYV KRHRKETTTL QSVVASLYDH VRPKLNVSFN KNQLVEKLRR LKRKHKLALD 180 KDKDKEVPFR NPQEQAIFEI SHKIWGIDTD NIIDQDALDG YESGHTPESH DHVGNIKVKI 240 EQLDNNDEID NRVPKRLRLD DADDVNKTND QNNGDSIQGF IEETMRSCFP PLLKEVLHDA 300 HEEPLPELEP IPMPLCPGEV DHEQWRKRRI LELEVYVKRL ELLQDQIKSR LEELRSN*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MLSPLVSWIL SPSSSSSSSE EEEEEILDII TDNDINHEND QKLNVEDDEC DVDNTIPVAL  60
AVPNASPAVT VAFPANDERN TIPVTATATT VVTCSKGQRN AKYSGMVRQY QRLWTKEDEM  120
ELLKGYLDYV KRHRKETTTL QSVVASLYDH VRPKLNVSFN KNQLVEKLRR LKRKHKLALD  180
KDKDKEVPFR NPQEQAIFEI SHKIWGIDTD NIIDQDALDG YESGHTPESH DHVGNIKVKI  240
EQLDNNDEID NRVPKRLRLD DADDVNKTND QNNGDSIQGF IEETMRSCFP PLLKEVLHDA  300
HEEPLPELEP IPMPLCPGEV DHEQWRKRRI LELEVYVKRL ELLQDQIKSR LEELRSN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G228300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006606478.1	0.0	probable transcription factor At5g28040
TrEMBL	I1NIU0	0.0	I1NIU0_SOYBN; Uncharacterized protein
STRING	GLYMA20G37220.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16305	7	9
Representative plant	OGRP3184	10	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28040.1	2e-32	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Glyma.20G228300.1.p
Entrez Gene	102659511