PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G224500.1.p
Common NameGLYMA_20G224500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 404aa    MW: 43257.9 Da    PI: 5.2807
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G224500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_152.97.7e-17217271357
                          XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                          ++kr rr+ +NRe+ArrsR+RK+a +  Le+ v +L +eN++L k+l   +++++
  Glyma.20G224500.1.p 217 DVKRVRRMLSNRESARRSRRRKQAHLTDLETQVSQLRGENSTLLKRLTDVSQKYS 271
                          689*****************************************99998888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.3E-13212270No hitNo description
SMARTSM003384.4E-20215279IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.335217269IPR004827Basic-leucine zipper domain
PfamPF001703.9E-15218270IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.54E-12219269No hitNo description
CDDcd147022.81E-7220271No hitNo description
PROSITE patternPS000360222237IPR004827Basic-leucine zipper domain
PfamPF124981.3E-41286403IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MDRVFSVDDI SDHFWQPPIP VSAAQTSSQM SRSASEWAFQ RFLQEASASA PSPPSSSSAA  60
DVVFVEIEDQ PKPAPPPPTN GAVLPNAPGP VPLDSDEYQA FLKSKLNLAC AAVAMTRGSL  120
AKSQDPSPFS EGGSQPTNPS LVESQTTSKG SIPSENDPSK LQDKDTNVPV GIPSIPAMQK  180
KPAVAIRPST SGSSREQSDD EDIEGETSMN DNTDPADVKR VRRMLSNRES ARRSRRRKQA  240
HLTDLETQVS QLRGENSTLL KRLTDVSQKY SDSAVDNRVL KADVETLRTK VKMAEETVKR  300
ITGLNPLLHA MSDISSLGLP SFDGRSPSDT SADAAVPVQD DPHHHFYQPT STNPIPSHDP  360
IVNNGLGGIS SIENVQQNAA VVLGGNKMGQ TASLQRVASL EHL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1231238RRSRRRKQ
2233238SRRRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.342900.0leaf
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G224500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2466650.0AB246665.1 Glycine max SBZ1 mRNA for bZIP protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237085.20.0bZIP transcription factor bZIP89
SwissprotQ990901e-122CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLI1NIQ10.0I1NIQ1_SOYBN; Uncharacterized protein
STRINGGLYMA20G36750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41763358
Representative plantOGRP18391639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-73bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]