PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G223300.3.p | ||||||||
Common Name | GLYMA_20G223300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 747aa MW: 84689.6 Da PI: 6.7048 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.5 | 7.1e-14 | 8 | 53 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Glyma.20G223300.3.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 33.2 | 1.2e-10 | 60 | 103 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Glyma.20G223300.3.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68*****************99.********8..**********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 22.008 | 2 | 57 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.9E-18 | 5 | 57 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.0E-15 | 6 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.55E-12 | 10 | 53 | No hit | No description |
Pfam | PF13921 | 3.1E-13 | 10 | 70 | No hit | No description |
SuperFamily | SSF46689 | 5.75E-21 | 33 | 106 | IPR009057 | Homeodomain-like |
CDD | cd11659 | 1.60E-30 | 55 | 106 | No hit | No description |
PROSITE profile | PS51294 | 16.443 | 58 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-14 | 58 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 58 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF11831 | 1.3E-61 | 406 | 654 | IPR021786 | Pre-mRNA splicing factor component Cdc5p/Cef1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009870 | Biological Process | defense response signaling pathway, resistance gene-dependent | ||||
GO:0010204 | Biological Process | defense response signaling pathway, resistance gene-independent | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 747 aa Download sequence Send to blast |
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR 180 LASLQKKREL KAAGIDIRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPQFPT 240 TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KRSKLMLPPP 300 QISDQELDEI AKLGYASDLA GSQELAEGSG ATRALLADYA QTPGQGMTPL RTPQRTPAGK 360 GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFNGVTPK KKEIQTPNPM LTPSATPGGA 420 GLTPRIGMTP TRDGFSFSMT PKGTPLRDAL HINEDMNMHD STKLELQRQA DMRRSLRSGL 480 GSLPQPKNEY QIVMQPVPED AEEPEEKIEE DMSDRIAREK AEEEARQQAL LRKRSKVLQR 540 ELPRPPTASL ELIRNSLMRT DVDKSSFVPP TSIEQADEMI RRELLSLLEH DNAKYPLDEK 600 VIKEKKKGAK RAVNGSAVPV IEDFEEDEMK EADKLIKEEA LYLCAAMGHE DEPLDEFIEA 660 HRTCLNDLMY FPTRNAYGLS SVAGNMEKLT ALQNEFENVR SKLDDDKEKT VRLEKKVMVL 720 TQGYEVEPVI KGHCLHYLLT NPQIPP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5mqf_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
5xjc_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
5yzg_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
5z56_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
5z57_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
5z58_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
6ff4_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
6ff7_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
6icz_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
6id0_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
6id1_L | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
6qdv_O | 0.0 | 2 | 725 | 3 | 725 | Cell division cycle 5-like protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 204 | KKRELKAAGIDIRQRKRKRK |
2 | 199 | 204 | RKRKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38358 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00028 | SELEX | Transfer from AT1G09770 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G223300.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556457.1 | 0.0 | cell division cycle 5-like protein isoform X1 | ||||
Swissprot | P92948 | 0.0 | CDC5L_ARATH; Cell division cycle 5-like protein | ||||
TrEMBL | A0A0R0EPU6 | 0.0 | A0A0R0EPU6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G36600.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09770.1 | 0.0 | cell division cycle 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G223300.3.p |
Publications ? help Back to Top | |||
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