PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G223300.1.p
Common NameGLYMA_20G223300, LOC100801352
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 964aa    MW: 108419 Da    PI: 5.0412
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G223300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.19.6e-14853248
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Glyma.20G223300.1.p  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                         78*****************************.************986 PP
2Myb_DNA-binding32.81.6e-1060103248
                          SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Glyma.20G223300.1.p  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                          68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.1E-131070No hitNo description
CDDcd001676.69E-121053No hitNo description
SuperFamilySSF466898.27E-2133106IPR009057Homeodomain-like
CDDcd116591.41E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.1E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118312.1E-61406654IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 964 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKKREL KAAGIDIRQR KRKRKGIDYN AEIPFEKRPP PGFFDVTDED RPVEQPQFPT  240
TIEELEGKRR VDVEAQLRKQ DIAKNKIAQR QDAPSAILHA NKLNDPETVR KRSKLMLPPP  300
QISDQELDEI AKLGYASDLA GSQELAEGSG ATRALLADYA QTPGQGMTPL RTPQRTPAGK  360
GDAIMMEAEN LARLRESQTP LLGGENPELH PSDFNGVTPK KKEIQTPNPM LTPSATPGGA  420
GLTPRIGMTP TRDGFSFSMT PKGTPLRDAL HINEDMNMHD STKLELQRQA DMRRSLRSGL  480
GSLPQPKNEY QIVMQPVPED AEEPEEKIEE DMSDRIAREK AEEEARQQAL LRKRSKVLQR  540
ELPRPPTASL ELIRNSLMRT DVDKSSFVPP TSIEQADEMI RRELLSLLEH DNAKYPLDEK  600
VIKEKKKGAK RAVNGSAVPV IEDFEEDEMK EADKLIKEEA LYLCAAMGHE DEPLDEFIEA  660
HRTCLNDLMY FPTRNAYGLS SVAGNMEKLT ALQNEFENVR SKLDDDKEKT VRLEKKVMVL  720
TQGYEMRVKK SLWPQIEATF KQMDVAATEL ECFKALQKQE QLAASHRINN LWAEVQKQKE  780
LEKTLQNRYG SLIEELEKMQ NVMDQCRLQA QQQEEIKANH ARESTETPET KADGIDVQGT  840
ANCEAVPHSV EHGRALAVES SADGTADQQV DIVHDQATSS VSHDMDVDSD KLANPTPAAE  900
NVDEKVEGTG TGTGSYTDDG ETMLEMGAAV EVSSPNHDVV VDAVNSHDNN SMEETNAVGE  960
ETY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028013800Cell division cycle 5-like protein
5xjc_L0.028013800Cell division cycle 5-like protein
5yzg_L0.028013800Cell division cycle 5-like protein
5z56_L0.028013800Cell division cycle 5-like protein
5z57_L0.028013800Cell division cycle 5-like protein
5z58_L0.028013800Cell division cycle 5-like protein
6ff4_L0.028013800Cell division cycle 5-like protein
6ff7_L0.028013800Cell division cycle 5-like protein
6icz_L0.028013800Cell division cycle 5-like protein
6id0_L0.028013800Cell division cycle 5-like protein
6id1_L0.028013800Cell division cycle 5-like protein
6qdv_O0.028013800Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KKRELKAAGIDIRQRKRKRK
2199204RKRKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.383580.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed extensively in shoot and root meristems. {ECO:0000269|PubMed:8917598}.
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G223300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556457.10.0cell division cycle 5-like protein isoform X1
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLI1NIN50.0I1NIN5_SOYBN; Uncharacterized protein
STRINGGLYMA20G36600.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Representative plantOGRP39481723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]