PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G214300.1.p
Common NameGLYMA_20G214300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 191aa    MW: 21579.8 Da    PI: 8.8372
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G214300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.62.7e-32862459
          ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                         +rYkeClkNhAa++Gg+a+DGCgEfm++ geegt +alkC+AC+CHRnFHR+e e+
  Glyma.20G214300.1.p  8 IRYKECLKNHAAAIGGNATDGCGEFMAA-GEEGTLEALKCSACNCHRNFHRKEIES 62
                         79*************************9.999********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-22862IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047703.5E-29860IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015667.3E-30960IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.9611059IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.603.6E-30116184IPR009057Homeodomain-like
SuperFamilySSF466894.27E-19119184IPR009057Homeodomain-like
TIGRFAMsTIGR015651.0E-27123180IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MEDKKIIIRY KECLKNHAAA IGGNATDGCG EFMAAGEEGT LEALKCSACN CHRNFHRKEI  60
ESSDSNAIPL MIIPDTTQII RPILAHLSPN KSGSISPSDL SDEKENEDGM MIKEVENPNE  120
KVKKRFRTKF TQEQKEKMLA FAERAGWRIQ KLDESLVQKF CQEIGIKRRV LKVWMHNNKN  180
TFAKRNPSTS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-261241811875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Not detected in the meristem prior to exposure to long days (LDs), but after exposure to three LDs, stable accumulation on the flanks of the meristem adjacent to floral primordia, during floral induction. {ECO:0000269|PubMed:22319055}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers and inflorescence. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Probably involved in the regulation of floral induction. {ECO:0000269|PubMed:22319055}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G214300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by exposure to long days. {ECO:0000269|PubMed:22319055}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354230.0AC235423.1 Glycine max strain Williams 82 clone GM_WBb0137C18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555538.11e-141zinc-finger homeodomain protein 4
RefseqXP_028219678.11e-141zinc-finger homeodomain protein 4-like
SwissprotQ9M9S04e-64ZHD4_ARATH; Zinc-finger homeodomain protein 4
TrEMBLA0A445F8F61e-139A0A445F8F6_GLYSO; Zinc-finger homeodomain protein 4
TrEMBLK7N4V51e-139K7N4V5_SOYBN; Uncharacterized protein
STRINGGLYMA20G35690.21e-140(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.23e-64homeobox protein 31