PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G203500.1.p | ||||||||
Common Name | GLYMA_20G203500, LOC100775830 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 148aa MW: 16395.9 Da PI: 6.0219 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.7 | 4e-20 | 18 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrd + + +r++lg+f taeeAa+a+++a+ +++g Glyma.20G203500.1.p 18 RYRGVRRRP-WGKFAAEIRDSTR---QgQRVWLGTFNTAEEAARAYDRAAYAMRG 68 6********.**********322...24*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.59E-16 | 18 | 77 | No hit | No description |
Pfam | PF00847 | 2.1E-15 | 18 | 68 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-33 | 18 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.736 | 18 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-24 | 18 | 78 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.2E-32 | 18 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 19 | 30 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 148 aa Download sequence Send to blast |
MDEEGSRGRA KEDAGDVRYR GVRRRPWGKF AAEIRDSTRQ GQRVWLGTFN TAEEAARAYD 60 RAAYAMRGPF AILNFPDEYP MTAGGATNAA TYSSAASSSS SASSSRHANV EARGRSEQGR 120 EVFEFEYLDD RLLEELLDCE DKKKRGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-36 | 3 | 146 | 2 | 128 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G203500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015041 | 1e-124 | AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606367.1 | 1e-103 | ethylene-responsive transcription factor ERF096 | ||||
Refseq | XP_028221348.1 | 1e-103 | ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 3e-41 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A445F7W6 | 1e-102 | A0A445F7W6_GLYSO; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | I1NI27 | 1e-102 | I1NI27_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G34550.1 | 1e-103 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 6e-24 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G203500.1.p |
Entrez Gene | 100775830 |
Publications ? help Back to Top | |||
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