PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G195900.1.p | ||||||||
Common Name | GLYMA_20G195900, LOC100306125 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 200aa MW: 22416.5 Da PI: 8.91 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.4e-19 | 108 | 159 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp++ g r++lg+f+t+ +Aaka++ a+ +++g+ Glyma.20G195900.1.p 108 HYRGVRRRP-WGKFAAEIRDPKKKG--SRVWLGTFDTEIDAAKAYDCAAFRMRGH 159 7********.**********96643..**********99**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.3E-32 | 107 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-22 | 108 | 168 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.12E-29 | 108 | 166 | No hit | No description |
Pfam | PF00847 | 6.0E-14 | 108 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-37 | 108 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.131 | 108 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-13 | 109 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-13 | 148 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:1902074 | Biological Process | response to salt | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MATAEEISTL KLLRQYLLGD ISDPFLTNLI PVKLEDPSSG LDMGSNFSEQ SSFCKFLECF 60 DFEAEVVGLT SHHKVQSSIA TSPPQNFNFP EEPMVSMKKE ATCYATRHYR GVRRRPWGKF 120 AAEIRDPKKK GSRVWLGTFD TEIDAAKAYD CAAFRMRGHK AVLNFPLEAG MSHPEPNSSG 180 RKRRREYTTA ATSSRHVMS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-29 | 107 | 167 | 4 | 64 | ATERF1 |
3gcc_A | 2e-29 | 107 | 167 | 4 | 64 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 180 | 184 | RKRRR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55962 | 0.0 | cotyledon| hypocotyl| root| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G195900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090081 | 0.0 | BT090081.1 Soybean clone JCVI-FLGm-3H9 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237945.1 | 1e-149 | putative ethylene-responsive transcription factor | ||||
TrEMBL | C6SY34 | 1e-148 | C6SY34_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G33800.1 | 1e-149 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 9e-41 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G195900.1.p |
Entrez Gene | 100306125 |