PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G193600.1.p
Common NameGLYMA_20G193600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 394aa    MW: 43213.4 Da    PI: 8.8387
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G193600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.71.3e-33124178155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kprlrWt +LHerFv+av+qLGG+ kAtPk+i+++m+vkgLtl+h+kSHLQkYRl
  Glyma.20G193600.1.p 124 KPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRL 178
                          79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-32121179IPR009057Homeodomain-like
PROSITE profilePS5129410.726121181IPR017930Myb domain
TIGRFAMsTIGR015571.3E-23124179IPR006447Myb domain, plants
SuperFamilySSF466891.58E-16124180IPR009057Homeodomain-like
PfamPF002491.1E-7126177IPR001005SANT/Myb domain
PfamPF143796.4E-13220265IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MIGGKQRAAN AKKEEKKGKA AESDKIPVKS DSASSLKPKS CAFHIPIFPF PFLLPLSPNG  60
SPITQSSPFF FPLSFFFASR WGFKFHHRMF SRLIHPHEGQ EDMQGGSNHA HLGDPCLVLT  120
SDPKPRLRWT ADLHERFVDA VTQLGGASKA TPKAIMRTMN VKGLTLYHLK SHLQKYRLGK  180
QSGKDSDEGC KDGMSASYLQ ESPGTDNSSP KLPDANEGHE VKEALRAQME VQSKLHLLVE  240
AEKHLQIRQD AERRYMGMLE RACKMLADQF IGDVTIDMDG QKFQGLESKT SRSSLVDHVG  300
FYPQACTEVG GMHASVVSPI LQPQGADCFT ESCLTSLESL GGLTLEGSPG GSKKRMLNLD  360
SMVAPLIWSE ANTRTQGIHL AKVNPSGMTR YGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-19124180157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-19124180157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-19124180157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-19124180157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.557120.0cotyledon| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269|PubMed:26586833}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G193600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in roots by low Pi. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932100.0BT093210.1 Soybean clone JCVI-FLGm-14A7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219495.10.0protein PHR1-LIKE 2-like isoform X1
SwissprotQ94A572e-60PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBLA0A445F7D70.0A0A445F7D7_GLYSO; Protein PHR1-LIKE 2 isoform A
TrEMBLK7N4H40.0K7N4H4_SOYBN; Uncharacterized protein
STRINGGLYMA20G33540.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66183349
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24120.18e-63G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]