PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G189000.1.p
Common NameGLYMA_20G189000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 400aa    MW: 43207 Da    PI: 8.8892
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G189000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix49.11.5e-1563131164
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykki 64 
                          +W++  + +L+ea++e+ + l rg+l+  +Weev++++      e++ ++s +qCk+k++nl+kryk +
  Glyma.20G189000.1.p  63 EWSDTAIACLLEAYTEKFNLLYRGNLRSRDWEEVAEAVggrcgGEGKHQKSVEQCKNKIDNLKKRYKVE 131
                          5*****************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.8E-1661135No hitNo description
Gene3DG3DSA:3.40.1160.102.9E-56176398IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536337.46E-45182398IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006961.9E-15185385IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042544.22E-104185398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
PTTLPAADIA TADYYPHASS FSDDSAKSNS KRASAAGSPY YNKKLKSTTD SVPATDYSKD  60
REEWSDTAIA CLLEAYTEKF NLLYRGNLRS RDWEEVAEAV GGRCGGEGKH QKSVEQCKNK  120
IDNLKKRYKV ELQKIGSGGI AGSSGAAAAN SPSMARQTKN RYAPSNATVA INLKLKPASN  180
LKWHRVLFKI SGSALAGNCQ NIDPKVAMQI AREVATTCRL GVEVAIVVGG RNFFCGDAWV  240
SATGLDRPMA YQIGMMGTVM NSILLQSALE KLGVQTRVQN TFLMPEVAEP YRRQRAIRHL  300
EKGRVIFGGV GAGTGNPHFT TDTAAALRAS ELTNVNGVFD CHPHNDNVTL DHISFREIVS  360
RNVTSMDMMA LAYCEENGIP VVVFNMLEPG NVSRALCGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A1e-5518339850272Uridylate kinase
3nwy_B1e-5518339850272Uridylate kinase
3nwy_C1e-5518339850272Uridylate kinase
3nwy_D1e-5518339850272Uridylate kinase
3nwy_E1e-5518339850272Uridylate kinase
3nwy_F1e-5518339850272Uridylate kinase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.135390.0flower| root| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G189000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006589367.10.0uncharacterized protein LOC100791426 isoform X1
RefseqXP_028183562.10.0uncharacterized protein LOC114370413 isoform X1
SwissprotQ0I8L52e-67PYRH_SYNS3; Uridylate kinase
TrEMBLK7N4D60.0K7N4D6_SOYBN; Uncharacterized protein
STRINGGLYMA20G33031.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40623252
Representative plantOGRP61611218
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-135Trihelix family protein