PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G186400.1.p
Common NameGLYMA_20G186400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 275aa    MW: 30783.7 Da    PI: 9.2386
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G186400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-05112131120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  n++ H+
  Glyma.20G186400.1.p 112 FSCTVCNKTFNRFNNMQMHM 131
                          89*****************9 PP
2zf-C2H213.70.00019197219123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C +C+k+F  + + ++H +++
  Glyma.20G186400.1.p 197 FECRKCHKPFAVRGDWRTHEKNC 219
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.77E-688133No hitNo description
Gene3DG3DSA:3.30.160.601.7E-5112131IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.15112134IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.201112139IPR007087Zinc finger, C2H2
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM0035591160192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.604.1E-5183217IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-5183217No hitNo description
SMARTSM0035580197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MQKTYSFSCI SSCGSDSACL EADEVNNEDS ISLSLGPPSQ HKFKSRASNP KHSSTMRDHQ  60
QKPSSDDLSG VTVALHIGLP TPTAATKPSS PPIHGRYWIP TPQQILIGPT QFSCTVCNKT  120
FNRFNNMQMH MWGHGSQYRK GSNSLRGSKA GSLMLRLPCY CCEEGCKNNI NYPRSKPLKD  180
FRTLKTHYKR KHGEKPFECR KCHKPFAVRG DWRTHEKNCG KLWFCVCGSD FKHKRSLKDH  240
VRAFGNGHAS HNLSEERGDE GGDDDSEVAV FTFK*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G186400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150411e-140AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555454.20.0zinc finger protein WIP6
SwissprotQ9FX681e-111ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A445F7200.0A0A445F720_GLYSO; Zinc finger protein WIP6
TrEMBLI1NHL60.0I1NHL6_SOYBN; Uncharacterized protein
STRINGGLYMA20G32750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-110C2H2-like zinc finger protein