PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G186200.1.p
Common NameGLYMA_20G186200, LOC100789009
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family RAV
Protein Properties Length: 363aa    MW: 39343.6 Da    PI: 9.2926
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G186200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.9e-1458106155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s+ykGV   + +grW A+I++      ++r++lg+f  ++eAa+a++ a+ +++g
  Glyma.20G186200.1.p  58 SKYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDIAAHRFRG 106
                          89****9888.8*********3.....5**********99************998 PP
2B389.82.1e-28178275183
                          EEEE-..-HHHHTT-EE--HHH.HTT.................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkang 73 
                          f+k+ t+sdv+k++rlv+pk++ae+h                     ++++ l +ed  g++W+++++y+++s++yvltkGW++Fvk+++
  Glyma.20G186200.1.p 178 FEKTVTQSDVGKLNRLVIPKQHAEKHfplsgsgggalpcmaaaA--GAKGMLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKN 265
                          99***************************999988888887542..34899*************************************** PP

                          --TT-EEEEE CS
                   B3  74 LkegDfvvFk 83 
                          L++gD v F 
  Glyma.20G186200.1.p 266 LRAGDAVQFF 275
                          *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.8E-858106IPR001471AP2/ERF domain
CDDcd000181.09E-2558113No hitNo description
SuperFamilySSF541712.48E-1758114IPR016177DNA-binding domain
SMARTSM003803.4E-2959120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-2059114IPR001471AP2/ERF domain
PROSITE profilePS5103220.37659114IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.101.1E-38172294IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.1E-28176292IPR015300DNA-binding pseudobarrel domain
CDDcd100171.28E-26177286No hitNo description
PROSITE profilePS5086312.703178292IPR003340B3 DNA binding domain
PfamPF023629.8E-26178275IPR003340B3 DNA binding domain
SMARTSM010191.8E-20178291IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MDGGSVTDET TTTSNSLSVP ANLSPPPLSL VGSGATAVVY PDGCCVSGEA ESRKLPSSKY  60
KGVVPQPNGR WGAQIYEKHQ RVWLGTFNEE DEAARAYDIA AHRFRGRDAV TNFKPLAGAD  120
DAEAEFLSTH SKSEIVDMLR KHTYDNELQQ STRGGRRRRD AETASSGAFD AKAREQLFEK  180
TVTQSDVGKL NRLVIPKQHA EKHFPLSGSG GGALPCMAAA AGAKGMLLNF EDVGGKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKNLRAGD AVQFFKSTGL DRQLYIDCKA RSGKVNNNAA  300
GLFIPVGPVV EPVQMVRLFG VDLLKLPVPG SDGIGVGCDG KRKEMELFAF ECSKKLKVIG  360
AL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A3e-5317529311119DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1340356KRKEMELFAFECSKKLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268490.0hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves. {ECO:0000269|PubMed:18718758}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor of flowering time on long day plants. Acts directly on FT expression by binding 5'-CAACA-3' and 5'-CACCTG-3 sequences. Functionally redundant with TEM2. {ECO:0000269|PubMed:18718758}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G186200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn. {ECO:0000269|PubMed:18718758}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1479140.0DQ147914.1 Glycine max RAV-like DNA-binding protein (RAV) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556265.10.0AP2/ERF and B3 domain-containing transcription repressor RAV2
SwissprotQ9C6M51e-134RAVL1_ARATH; AP2/ERF and B3 domain-containing transcription repressor TEM1
TrEMBLI1NHL50.0I1NHL5_SOYBN; Uncharacterized protein
STRINGGLYMA20G32730.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29203274
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25560.11e-132RAV family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Choi D, et al.
    iNID: an analytical framework for identifying network models for interplays among developmental signaling in Arabidopsis.
    Mol Plant, 2014. 7(5): p. 792-813
    [PMID:24380880]
  3. Sgamma T,Jackson A,Muleo R,Thomas B,Massiah A
    TEMPRANILLO is a regulator of juvenility in plants.
    Sci Rep, 2014. 4: p. 3704
    [PMID:24424565]
  4. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  5. Marín-González E, et al.
    SHORT VEGETATIVE PHASE Up-Regulates TEMPRANILLO2 Floral Repressor at Low Ambient Temperatures.
    Plant Physiol., 2015. 169(2): p. 1214-24
    [PMID:26243615]
  6. Matías-Hernández L, et al.
    TEMPRANILLO Reveals the Mesophyll as Crucial for Epidermal Trichome Formation.
    Plant Physiol., 2016. 170(3): p. 1624-39
    [PMID:26802039]