PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G185500.1.p | ||||||||
Common Name | GLYMA_20G185500, LOC100785826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 348aa MW: 38889.5 Da PI: 6.6606 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2.2e-14 | 163 | 209 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr+llP+ +K +Ka+ L ++++++k+L Glyma.20G185500.1.p 163 KSHSEAERRRRERINNHLAKLRSLLPST-----TKTDKASLLAEVIQHVKEL 209 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.907 | 160 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 8.4E-12 | 163 | 209 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.2E-14 | 164 | 216 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.1E-14 | 164 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.3E-13 | 166 | 215 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.42E-5 | 173 | 212 | No hit | No description |
CDD | cd04873 | 8.45E-7 | 246 | 299 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 348 aa Download sequence Send to blast |
MIQEDQGQCS SQAINNYHQA YQEQLLLQQQ MQQQQQQQQQ NNDIFGGGLN MYPGGEVSQI 60 MHHHHHQPWS MTMPHHHHHH HQVHDPFLVP PQTSPYASLF NRRGPSLQFA YDHGSSSDHL 120 RIISESFVGP VVQPGSAPFG LQTELAKMTA QEIMEAKALA ASKSHSEAER RRRERINNHL 180 AKLRSLLPST TKTDKASLLA EVIQHVKELK RQTSLIAETS PVPTEADELT VVDEADEDGN 240 SVIKASLCCE DRSDLFPELI KTLKALRLRT LKAEITTLGG RVKNVLFITG EETDSSSSED 300 HSQQQQQCCI SSIQEALKAV MEKSVGDHHE SASANIKRQR TNIISMS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 173 | ERRRRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18962 | 0.0 | hypocotyl| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G185500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095885 | 0.0 | BT095885.1 Soybean clone JCVI-FLGm-20E1 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241119.1 | 0.0 | HLH and ACT domain-containing protein | ||||
Refseq | XP_025983056.1 | 0.0 | HLH and ACT domain-containing protein isoform X1 | ||||
Refseq | XP_028220625.1 | 0.0 | transcription factor bHLH30-like | ||||
Refseq | XP_028220626.1 | 0.0 | transcription factor bHLH30-like | ||||
Swissprot | Q9S7Y1 | 5e-97 | BH030_ARATH; Transcription factor bHLH30 | ||||
TrEMBL | A0A445F712 | 0.0 | A0A445F712_GLYSO; Transcription factor bHLH30 isoform B | ||||
TrEMBL | A0A445F716 | 0.0 | A0A445F716_GLYSO; Transcription factor bHLH30 isoform A | ||||
TrEMBL | C6TE65 | 0.0 | C6TE65_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G32660.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4589 | 34 | 58 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68810.1 | 6e-75 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G185500.1.p |
Entrez Gene | 100785826 |
Publications ? help Back to Top | |||
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