PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G184300.2.p
Common NameGLYMA_20G184300, LOC100527800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 506aa    MW: 55638.7 Da    PI: 6.9115
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G184300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000524024341855
                          HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  18 safeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +++  L++++ +      +K + a++L +A+ YIk Lq
  Glyma.20G184300.2.p 402 DKITALQQIVSPF-----GKTDTASVLFEAIGYIKFLQ 434
                          7888889988887.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.972384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-8399441IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-9399450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.41E-4402438No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MTEESAGNTV ATSITPFNWW YLQANSLSSW NDTNSTWNSQ PNPNSSSSCE EDISVSTSFT  60
NASNHSSLTV ESSRRLIEPP APSSNELMGE HASDNQLWSH VLSGVGSNGE LHNGQEIGEN  120
FLDALSSKSM TSTMFQPVCD YLKKLDHTSW EYNGPTSLNS FEKHLNGFSE AMIENNERLT  180
KLSNLVSTWS IAPPDPEVSS HFDPQTNNMS LSSNSMDHHF PQSEHFKQPF RDSTSSCSLG  240
GASRSSGVIP NCYDHDMKVK QEYHASEVPP GAVFGKTLNA NGFNSLSVGD SCKLYHGMPN  300
ISSCTRNFSD VISFNSRLGR PVIGVHSQKP SMKYLNVSES KKQGLQTPSP PIRTNVNGKG  360
EGTTREVKKK RSEESSDAML KKPKQDTSTA SSSKAPKVKL GDKITALQQI VSPFGKTDTA  420
SVLFEAIGYI KFLQEQVQLL SNPYLKANTH KDPWGSLDRK DKEDTKLDLR SRGLCLVPTS  480
CTPLVYRDSS GPDYWTPAYR GCLYR*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G184300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0926770.0BT092677.1 Soybean clone JCVI-FLGm-11D9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014627710.10.0basic helix-loop-helix (bHLH) DNA-binding protein isoform X1
RefseqXP_028220533.10.0transcription factor bHLH111-like isoform X2
TrEMBLA0A0R0EPC40.0A0A0R0EPC4_SOYBN; Uncharacterized protein
STRINGGLYMA20G32520.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.14e-63bHLH family protein