PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G184100.1.p
Common NameGLYMA_20G184100, LOC100780809
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 275aa    MW: 31855.8 Da    PI: 6.5948
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G184100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.3e-181562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+W++eEd++l ++v+ +G g W+  +++ g++R++k+c++rw++yl
  Glyma.20G184100.1.p 15 RGPWSAEEDKILMNYVQVHGEGKWRELSKRAGLKRCGKSCRLRWLNYL 62
                         89********************************************97 PP
2Myb_DNA-binding52.61e-1668113148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ + +E++l+++++k+lG++ W++Ia +++ gRt++++k++w++yl
  Glyma.20G184100.1.p  68 RGNISSDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTYL 113
                          78999*****************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.3161062IPR017930Myb domain
SuperFamilySSF466893.52E-3013109IPR009057Homeodomain-like
SMARTSM007172.3E-141464IPR001005SANT/Myb domain
PfamPF002492.1E-161562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-241669IPR009057Homeodomain-like
CDDcd001671.03E-101762No hitNo description
PROSITE profilePS5129426.01863117IPR017930Myb domain
SMARTSM007175.4E-1667115IPR001005SANT/Myb domain
PfamPF002494.8E-1568113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2470116IPR009057Homeodomain-like
CDDcd001675.35E-1172113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRKANCDNQ YAMNRGPWSA EEDKILMNYV QVHGEGKWRE LSKRAGLKRC GKSCRLRWLN  60
YLKPDIKRGN ISSDEEDLII RLHKLLGNRW SLIAGRLPGR TDNEIKNYWN TYLRKKAEHK  120
HDKIPSHNDN IPIKLRIESP GCSKNSFGNV LDPTKSPHPM RCTKVMMPVN DSVNTTNLIT  180
TSWDNHNPSS ASMQLDDYNH CLTGVLQEFD ISDLLMSYED DFRFNGYACV EIPQHIFEDE  240
TCRLDDSLGE EAWYENWKND PYFPQDQDMG FSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-281311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G184100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150413e-55AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555449.10.0transcription factor WER
RefseqXP_028221535.10.0transcription factor WER-like
TrEMBLA0A445F7C40.0A0A445F7C4_GLYSO; Transcription repressor MYB5
TrEMBLI1NHJ30.0I1NHJ3_SOYBN; Uncharacterized protein
STRINGGLYMA20G32500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15511512
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-58myb domain protein 5