PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G181000.1.p
Common NameGLYMA_20G181000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 1540aa    MW: 171887 Da    PI: 6.7993
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G181000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002114241449123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt.H 23  
                           +kC    C +sF++k +L+ H r+ +
  Glyma.20G181000.1.p 1424 HKCDldGCRMSFKTKAELQLHKRNlC 1449
                           799999****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005451.6E-131555IPR003349JmjN domain
PROSITE profilePS5118313.7581657IPR003349JmjN domain
PfamPF023753.0E-151750IPR003349JmjN domain
SuperFamilySSF511977.0E-27293460No hitNo description
SMARTSM005586.2E-46293463IPR003347JmjC domain
PROSITE profilePS5118433.641293463IPR003347JmjC domain
PfamPF023739.3E-36326446IPR003347JmjC domain
Gene3DG3DSA:3.30.160.605.9E-514161446IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM00355814241446IPR015880Zinc finger, C2H2-like
SMARTSM003550.6714471471IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.7814471476IPR007087Zinc finger, C2H2
SuperFamilySSF576671.38E-514481484No hitNo description
PROSITE patternPS00028014491471IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-414491475IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene3DG3DSA:3.30.160.601.3E-1014761501IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.27914771506IPR007087Zinc finger, C2H2
SMARTSM003554.1E-414771501IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028014791501IPR007087Zinc finger, C2H2
SuperFamilySSF576673.72E-1114871537No hitNo description
Gene3DG3DSA:3.30.160.606.3E-1115021530IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.6615071533IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.26315071538IPR007087Zinc finger, C2H2
PROSITE patternPS00028015091533IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1540 aa     Download sequence    Send to blast
MGSVEIPNWL KGLPLAPEFR PTDTEFADPI AYISKIEKEA ANFGICKIIP PLPKPSKKYV  60
FSNLNRSLLK CPDLGPDNSS LGVCNSSKTG YGDGSSDGVS RAVFTTRHQE LGRSQNVKKA  120
KGTVQNPLSG VHKQVWQSGE VYTLEQFESK SKSFAKSVLG SVKDVSPLVI ESLFWKATLE  180
KPIYVEYAND VPGSAFEESK GQFHYSHRRQ RKKTYYKSRL DSSDCKQTEM GCVRDTQTDE  240
TKVASVQSHA GTCLQMNKSA TTVSTFSSND DSQSSKEKSS DASNEVQGTA GWKLSNSPWN  300
LQVIARSSGS LTRFMPDDIP GVTSPMVYIG MLFSWFAWHV EDHELHSMNF LHTGSSKTWY  360
AVPGDYAFAF EEVIRTEGYS GNIDHLGICL KLLGEKTTLL SPEVIVASGI PCFRLTQHPG  420
EFVVTFPRAY HVGFSHGFNC GEAANFGTPQ WLRVAKEAAV RRAAMNYLPM LSHQQLLYLL  480
SMSFISRVPR TLLPGVHSSR LRDRQKEERE FLVKQAFIED MLQENKLLSI LLGKEATKKA  540
VLWNADLLPD SSKDFQLPDL TSTTGTSMAD MSNIISAEKS SHYLLDEMSL YMENLTNLDL  600
GGDDLPCHFQ TDSGALACVG CGILGFPFMT VIQPTKKLIM ELLPDNHHLV QVSSPDSTAC  660
VNSSISRDLS VSELSSVKEL PDQSLNKCNK CWNTSSKFLR PRIFCLEHAV QISEMLQSKG  720
GANVLIICHS DYQKIKAHAR AVAEEIHSAF DYNEVPLDTA SPENLTLIDL AIDGEEHDEC  780
EDWTSKLGIN LRNCVHARNN SPSKQVPWIL GTLLYDQCLA SKSLALNWQS RRSRSKRSSC  840
LAQTKPCDNI ERKEDQLYGR IDDFPAEKKL LQYSRRKFKS KQRCFPVASM VCEFQEKSKN  900
LSATLSGDHN NCVSKTELET ENFRIDCSLL CVSASAEMSP MHPEIQIAEV PASTRLNDAK  960
SQPSNSIPDR TLMIEEVGAE IEKQNMQESD VDRNNDLTLR HSKMHCNSSV SEICGKEGQD  1020
CLDKKCSSSL TNTTDRHIEM IRNSEITEAV IIDSKCDSLT LNGEGHQEYQ STCKSNNVEA  1080
ALSPASLVNH STLASVVGSF ESPNNNYTAE KISSLIFLEK ATEEEIDSLS ERDKEPLIDD  1140
RQISEHTPKE VCEVRRELYA SADLHSTVVL DSEMQHETQG GKDSRKEINQ STHVSAITRG  1200
EYAEGLNDEV IPKSVEQCQF ENMNKITMEP VSSYVAKGEN KCVTSSELGG SEVLVETCPK  1260
EDSCIQLISD KEKETEIHSV SRIDEEFCSG TDTSIDDSSS IQECSKIEQE SCVTENINGI  1320
KTNLSQDNRE LESCEFSTAV PRSNAGKNRK RKVKHTTKNK SNCDNFIRSP CEGLRPRAGK  1380
IAADKSGVEI NQVDKENQVA KRARRSSEAL VPRKNKKDDV KKPHKCDLDG CRMSFKTKAE  1440
LQLHKRNLCP HEGCGKKFSS HKYALLHQRV HNDDRPLKCP WKGCSMSFKW AWARTEHMRV  1500
HTGEKPYHCK VEGCGLSFRF VSDFSRHRRK TGHHVKPPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ip0_A3e-54276477137346Transcription factor jumonji (Jmj) family protein
6ip4_A3e-54276477137346Arabidopsis JMJ13
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1831836RSRSKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.625470.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at low levels in cotyledons and leaves. Detected in inflorescences, stems, roots and siliques but not in shoot apical meristems or root tips. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18713399}.
Functional Description ? help Back to Top
Source Description
UniProtActs probably as a histone 'Lys-4' (H3K4me) demethylase. Involved in transcriptional gene regulation. Acts as a repressor of the photoperiodic flowering pathway and of FT. Binds around the transcription start site of the FT locus. {ECO:0000269|PubMed:15377760, ECO:0000269|PubMed:18467490, ECO:0000269|PubMed:19946624}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G181000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606254.10.0probable lysine-specific demethylase ELF6 isoform X1
RefseqXP_006606255.10.0probable lysine-specific demethylase ELF6 isoform X1
SwissprotQ6BDA00.0ELF6_ARATH; Probable lysine-specific demethylase ELF6
TrEMBLI1NHH00.0I1NHH0_SOYBN; Uncharacterized protein
STRINGGLYMA20G32160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80313034
Representative plantOGRP75061114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.10.0C2H2 family protein
Publications ? help Back to Top
  1. Heidari B,Nemie-Feyissa D,Kangasjärvi S,Lillo C
    Antagonistic regulation of flowering time through distinct regulatory subunits of protein phosphatase 2A.
    PLoS ONE, 2013. 8(7): p. e67987
    [PMID:23976921]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Crevillén P, et al.
    Epigenetic reprogramming that prevents transgenerational inheritance of the vernalized state.
    Nature, 2014. 515(7528): p. 587-90
    [PMID:25219852]
  4. Yang H,Howard M,Dean C
    Physical coupling of activation and derepression activities to maintain an active transcriptional state at FLC.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(33): p. 9369-74
    [PMID:27482092]