PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G180100.1.p
Common NameGLYMA_20G180100, LOC100816641
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 349aa    MW: 37585.3 Da    PI: 5.2371
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G180100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.11.1e-17254287134
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                          C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Glyma.20G180100.1.p 254 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 287
                          99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.5E-753341IPR016679Transcription factor, GATA, plant
SMARTSM004011.7E-16248298IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.583248284IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.0E-14252285IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577161.24E-14252311No hitNo description
CDDcd002027.24E-14253310No hitNo description
PROSITE patternPS003440254279IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15254287IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MVGPNFMDEI DCGSFFDHID DLLDFPVEDV DGGAATLPSV AAAGNCNSLA SIWPAESDSF  60
PTSDSVFSGN TASDLSAELS VPYEDIVQLE WLSNFVEDSF CGGSLTMNKV EEPSCTTKED  120
SVNTQFHTSS PVSVLESSSS CSGGKTFPLS SPEIYIPVPC GRTRSKRPRP ATFNPRPAMN  180
LISPASSFVG ENMQPNVISS KSSSDSENFA ESQLVPKMPK QASEEPKKKK KVKLPLPLVP  240
ADNNQNASQP VRKCMHCEIT KTPQWRAGPM GPKTLCNACG VRYKSGRLFP EYRPAASPTF  300
CPSVHSNSHK KVLEMRCRGI DKSGFAINSA ASPELIPNTN SSLPLEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1161166RTRSKR
2165169KRPRP
3225231PKKKKKV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.219980.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G180100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606248.10.0GATA transcription factor 8 isoform X1
TrEMBLI1NHG20.0I1NHG2_SOYBN; GATA transcription factor
STRINGGLYMA20G32050.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.29e-42GATA family protein