PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G180000.1.p
Common NameGLYMA_20G180000, LOC100818234
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 594aa    MW: 65247 Da    PI: 7.1292
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G180000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-22124225199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++        +++ +  t++ +d  g+ W++++iyr++++r++lt+GW++Fv++++L +gD++vF 
  Glyma.20G180000.1.p 124 FAKTLTQSDANNGGGFSVPRYCAETIfprldysAEPPVQ--TIIAKDMLGQCWKFRHIYRGTPRRHLLTTGWSNFVNQKRLVAGDSIVFL 211
                          89****************************986445444..8************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Glyma.20G180000.1.p 212 --RAENGDLCVGIRRA 225
                          ..4488999****997 PP
2Auxin_resp1102.4e-36279361283
           Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          ++ a ++ +FevvY+Pras++eF+vk++ v++a++++++ GmRfkm fetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
  Glyma.20G180000.1.p 279 VTCAVNGRPFEVVYYPRASSPEFCVKASVVKAAMQIQWCSGMRFKMPFETEDSSRISWfMGTISSVQVADPILWPDSPWRLLQ 361
                          6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-36117227IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.59E-29119225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.36E-21123224No hitNo description
PfamPF023621.2E-20124225IPR003340B3 DNA binding domain
SMARTSM010192.0E-18124226IPR003340B3 DNA binding domain
PROSITE profilePS5086312.929124226IPR003340B3 DNA binding domain
PfamPF065074.7E-32279361IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MFMVMDSAER CLDSQLWHAC AGAMVQMPPL NTKVFYFPQG HAEHAHGKRV DFPKNQTRVP  60
PLIPCRLSAM KYMADPDTDE VYVKMRLTPL REHELLDSQD DCFLGNSAGG GGVDQGQEKP  120
PTSFAKTLTQ SDANNGGGFS VPRYCAETIF PRLDYSAEPP VQTIIAKDML GQCWKFRHIY  180
RGTPRRHLLT TGWSNFVNQK RLVAGDSIVF LRAENGDLCV GIRRAKKGIG GGTEFSSGGW  240
NNPLFGGGFL CGSESNLMSG GDHEMLVGRV AAESVVEAVT CAVNGRPFEV VYYPRASSPE  300
FCVKASVVKA AMQIQWCSGM RFKMPFETED SSRISWFMGT ISSVQVADPI LWPDSPWRLL  360
QVVWDEPDLL QNVKCVNPWL VELVSNMPTF NLSAYSPPRK KQRFLQDPYF QVINQLPMPS  420
FSSNLLNYTN SICTIEDNNS SGGIQGARHP QFGLSPSDFP FNKLPADMLL GGFSRLDHAA  480
AQPIMPHCGT FKNNTTTKAN VDISCLLTVG NPGQNFKESN ETKAPHILLF GKLIHTEQKS  540
SNTTSSASTN GNSVSEGNSL KTSNASDGGS PWYKEQHKSD LGNDNVNTLC IAL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-761238251388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G180000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555436.20.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLI1NHG10.0I1NHG1_SOYBN; Auxin response factor
STRINGGLYMA20G32040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]