PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G172800.1.p
Common NameGLYMA_20G172800, LOC100809161
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 143aa    MW: 15961.3 Da    PI: 7.9133
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G172800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.93.4e-152466349
                  AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                         y GVr ++ +gr++AeIr p++   + r +lg+f+taeeAa a++  
  Glyma.20G172800.1.p 24 YLGVRKRP-WGRYAAEIRNPYT---KERRWLGTFDTAEEAAIAYDLS 66
                         77******.**********865...5999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.312380IPR001471AP2/ERF domain
SMARTSM003805.8E-292386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.6E-262380IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-202381IPR016177DNA-binding domain
CDDcd000189.56E-292479No hitNo description
PRINTSPR003674.9E-92435IPR001471AP2/ERF domain
PfamPF008472.1E-82565IPR001471AP2/ERF domain
PRINTSPR003674.9E-94662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MENLPPLMCK NLIRKRTSRR STMYLGVRKR PWGRYAAEIR NPYTKERRWL GTFDTAEEAA  60
IAYDLSSIKI CGINARTNFH YPFVSLPPPP MSLPPPPPPP TPELDPSVEV CPEMNAAYDG  120
DDESLVIASI LQSFSNTGNC SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-152079262ATERF1
3gcc_A2e-152079262ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G172800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0118101e-179AP011810.1 Glycine max DNA, BAC clone: MiB039C03, complete sequence.
GenBankAP0118131e-179AP011813.1 Glycine max DNA, BAC clone: MiB319A04, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028219793.11e-101ethylene-responsive transcription factor LEP-like
SwissprotQ3E7037e-26ERF88_ARATH; Ethylene-responsive transcription factor ERF088
TrEMBLA0A445F6J21e-100A0A445F6J2_GLYSO; Ethylene-responsive transcription factor ERF088
TrEMBLK7N4131e-100K7N413_SOYBN; Uncharacterized protein
STRINGGLYMA20G31293.11e-101(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.17e-28ERF family protein