PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G168500.1.p
Common NameGLYMA_20G168500, LOC100802242
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 280aa    MW: 29588.6 Da    PI: 6.6371
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G168500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.61e-2064114256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 
                          +y+GVr+++ +g+W+AeIrdp     +  +r++lg+f+tae Aa+a+++a+++++g+
  Glyma.20G168500.1.p  64 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRGN 114
                          7********.**********7.....337*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.0E-1464113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-3364122IPR001471AP2/ERF domain
SMARTSM003803.4E-3964127IPR001471AP2/ERF domain
PROSITE profilePS5103225.71264121IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-2364122IPR016177DNA-binding domain
PRINTSPR003675.8E-126576IPR001471AP2/ERF domain
CDDcd000189.20E-1572123No hitNo description
PRINTSPR003675.8E-1287103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMSRFMHAPS PVLSSSHPHL GVGHKRERED DTGAGASGGV AIAAASSQTQ TQEIESAGGD  60
RRRRYRGVRQ RPWGKWAAEI RDPHKAARVW LGTFDTAEAA ARAYDEAALR FRGNRAKLNF  120
PENVVPVPPP PPVPDLPASA VAGSDSISGS GSVVAGFSPT LMQGAPFQGS SAFLRDYWGY  180
SQLLRSTGDF HGLDQWFFDS QMAAFQSSSS SLLPSPPPPS FSPSSASYPL FSSSQQMGIF  240
RPPGEQGHGG EDGGSGSEFS ELPPSTWSDT SGYPPPPPG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-2265124666ATERF1
3gcc_A1e-2265124666ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15964DRRRRY
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.101000.0flower| leaf| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G168500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0118220.0AP011822.1 Glycine max DNA, BAC clone: WBb35C13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006606168.10.0ethylene-responsive transcription factor ERF110
RefseqXP_006606169.10.0ethylene-responsive transcription factor ERF110
RefseqXP_006606171.10.0ethylene-responsive transcription factor ERF110
RefseqXP_006606172.10.0ethylene-responsive transcription factor ERF110
RefseqXP_014627801.10.0ethylene-responsive transcription factor ERF110
RefseqXP_025983077.10.0ethylene-responsive transcription factor ERF110
TrEMBLA0A0R4J6770.0A0A0R4J677_SOYBN; Uncharacterized protein
STRINGGLYMA20G30835.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49193253
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43160.19e-11related to AP2 6