PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G163200.1.p
Common NameGLYMA_20G163200, LOC100792164
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 322aa    MW: 35837.2 Da    PI: 6.3693
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G163200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32e-30184242259
                          --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++p+++++tY+g+H h+
  Glyma.20G163200.1.p 184 ADLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCMARKQVERSNTEPDMFIVTYSGDHSHP 242
                          699************************998****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-30169244IPR003657WRKY domain
SuperFamilySSF1182903.79E-26178244IPR003657WRKY domain
PROSITE profilePS5081132.546178244IPR003657WRKY domain
SMARTSM007741.9E-36183243IPR003657WRKY domain
PfamPF031066.6E-26185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MAEDWDLFAI VRSCQSATTT IPQTTTNNTS SPLITSTVKE ENYDGFSFPN IVQPITNEFQ  60
ALHQLFTPFN PTTNTTNTSA SGINPNSPYF AEQESQQISE HLPIWPHFVP EHSSTPSFSR  120
FHDHQQQQQQ INQLQALQKH EFQLPQNNSP TVSPNAQPQT PKSRKRKSQQ KKMVCHVTAD  180
NLSADLWAWR KYGQKPIKGS PYPRNYYRCS SSKGCMARKQ VERSNTEPDM FIVTYSGDHS  240
HPRPTHRNSL AGSTRNKIPA TNPLPSPGSL SSFQATPFSS SSSSPPHSPT SPSEEPPETG  300
DLEPDPDMET DGDDDGDIQI Q*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-20167245280Disease resistance protein RRS1
5w3x_D2e-20167245280Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G163200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0195531e-151EU019553.1 Glycine max WRKY2 (WRKY2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555395.10.0probable WRKY transcription factor 27
RefseqXP_028220877.10.0probable WRKY transcription factor 27
TrEMBLA0A0B2PUC10.0A0A0B2PUC1_GLYSO; Putative WRKY transcription factor 27
TrEMBLI1NGY60.0I1NGY6_SOYBN; Uncharacterized protein
STRINGGLYMA20G30290.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-53WRKY DNA-binding protein 27