PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G162800.3.p | ||||||||
Common Name | GLYMA_20G162800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 287aa MW: 31610.9 Da PI: 9.9266 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.8 | 2.2e-12 | 55 | 99 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+ E++++++a +++ + Wk+I + +g +t q++s+ qky Glyma.20G162800.3.p 55 RESWTEPEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 99 789*****************77.*********.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.62E-16 | 49 | 105 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.18 | 50 | 104 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-18 | 53 | 102 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 5.5E-6 | 53 | 105 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-10 | 54 | 102 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-10 | 55 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.65E-8 | 57 | 100 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MVSKNPNPSE AFYLDPSGMS LPGILPFAAA ATATADSFED PAKKTRKPYT ITKSRESWTE 60 PEHDKFLEAL QLFDRDWKKI EAFVGSKTVI QIRSHAQKYF LKVQKSGTNE HLPPPRPKRK 120 AAHPYPQKAS KTAPVLSQVS GSFQSSSALL EPGYILKHDS SAMPKTPIIN TAVSSWSNNS 180 LQKTTSVLHG QKQKVNNCCS SSRSPRAQLV GESNGQRNNS HPLRVLPDFA EVYSFIGSVF 240 DPNVTGHVQK LKRMDPIDVE TVLLLMRNLS INLASPDFED HAACII* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36018 | 0.0 | flower |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G162800.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556126.1 | 0.0 | protein REVEILLE 6 isoform X3 | ||||
Swissprot | Q8H0W3 | 1e-113 | RVE6_ARATH; Protein REVEILLE 6 | ||||
TrEMBL | K7N3U6 | 0.0 | K7N3U6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G30250.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52660.1 | 7e-93 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G162800.3.p |
Publications ? help Back to Top | |||
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