PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G157900.1.p
Common NameGLYMA_20G157900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 334aa    MW: 37934 Da    PI: 9.8818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G157900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.21e-1478125148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W++eEd +l + + ++G g+W++++ + g+ R +k+c++rw +yl
  Glyma.20G157900.1.p  78 KGLWSPEEDNKLRNHILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYL 125
                          678*******************************************97 PP
2Myb_DNA-binding55.41.4e-17131176148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+++++E+e ++ ++++lG++ W++I+++++ gRt++++k++w++yl
  Glyma.20G157900.1.p 131 RGKFSKQEEETILTLHHMLGNK-WSRISQHLP-GRTDNEIKNYWHSYL 176
                          89********************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.86373125IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-2273128IPR009057Homeodomain-like
SuperFamilySSF466893.26E-2875172IPR009057Homeodomain-like
SMARTSM007172.8E-1177127IPR001005SANT/Myb domain
PfamPF002493.8E-1378125IPR001005SANT/Myb domain
CDDcd001671.65E-981125No hitNo description
PROSITE profilePS5129426.07126180IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-25129180IPR009057Homeodomain-like
SMARTSM007172.2E-16130178IPR001005SANT/Myb domain
PfamPF002499.1E-17131176IPR001005SANT/Myb domain
CDDcd001674.32E-11133176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
MALVRTIFSY SNFNMHPLVD SSRLSGSLLL PFISSTAYIS HRNRTKTENP SLPLKWNSVR  60
LSKMGYQPLE KGKPKHKKGL WSPEEDNKLR NHILKHGHGC WSSVPIKAGL QRNGKSCRLR  120
WINYLRPGLK RGKFSKQEEE TILTLHHMLG NKWSRISQHL PGRTDNEIKN YWHSYLKKRV  180
AKAKEMESHN QIKYASSSSD TMDSSHSLQN LATQCPLNYN FTKEASQSSL PKLLFAEWLS  240
LDHLNSANSV DSLGLRNGFD QNSSFHEAAI HDMSEVPFGG EYNRCVSNIS APEMFNSQLK  300
YGNQMVENGY IHCMPGVDLS SNFSISNDAI MYI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-23721801108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G157900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977340.0BT097734.1 Soybean clone JCVI-FLGm-16G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556102.10.0transcription factor LAF1
SwissprotQ9M0K42e-57LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0R0ECB40.0A0A0R0ECB4_SOYBN; Uncharacterized protein
STRINGGLYMA20G29710.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38303161
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48920.12e-61myb domain protein 45
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]