PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G155200.1.p | ||||||||
Common Name | GLYMA_20G155200, LOC100776717 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 207aa MW: 22030.4 Da PI: 4.4067 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 52.8 | 9.9e-17 | 44 | 92 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G r+++ g+Wv+eIr+p++ +kr++lg++ tae+Aa+a++ a+++l+g Glyma.20G155200.1.p 44 RYRGTRYRS--GKWVSEIREPRK---TKRIWLGTYPTAEMAAAAYDVAALALKG 92 577777754..88*******843...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.8E-28 | 44 | 106 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.46E-16 | 44 | 102 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-25 | 44 | 101 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-10 | 44 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.35 | 44 | 100 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-18 | 45 | 102 | IPR016177 | DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MDGNPFGNVP PPPIQVPDNL AISSSSSPTP TTSSPSPTPS GGVRYRGTRY RSGKWVSEIR 60 EPRKTKRIWL GTYPTAEMAA AAYDVAALAL KGPDTPLNFP NSILSYPIPA SLSATDIRAA 120 AAAAAQARIV RAPQECGETV NPDDGGGQGM SERREEYIDE DELLNMPNLL DDMARGMQVS 180 PLRITSYSSD DSPGNSDGDN LWSYTL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G155200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606090.1 | 1e-147 | ethylene-responsive transcription factor ERF027 | ||||
Swissprot | Q9FJ90 | 3e-44 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | I1NGP8 | 1e-146 | I1NGP8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G29440.1 | 1e-147 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF562 | 32 | 144 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-30 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G155200.1.p |
Entrez Gene | 100776717 |
Publications ? help Back to Top | |||
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