PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G153700.1.p
Common NameGLYMA_20G153700, LOC100778860
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 231aa    MW: 26573.2 Da    PI: 9.3146
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G153700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.59.5e-30959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         +ri+nk+nrqvtfskRrng+lKKA+ELSvLCdae+a+iifss+gkl+ yss
  Glyma.20G153700.1.p  9 ERIQNKINRQVTFSKRRNGLLKKAFELSVLCDAEIALIIFSSRGKLFQYSS 59
                         69***********************************************96 PP
2K-box65.22.3e-2280171797
                K-box   7 ks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                           + +e++ ++ l+qel  L+ + e+Lqr+qR+llGe+Le+Ls+keL++Le+qL++ l + R++ ++ l++ i+el  k ++l++ nk L+
  Glyma.20G153700.1.p  80 GDvTEHQSEQCLYQELLILRVKHESLQRTQRNLLGEELEPLSMKELHSLEKQLDRTLGQARKHLTQKLISRIDELHGKVHNLEQVNKHLE 169
                          3347788899*******************************************************************************9 PP

                K-box  96 kk 97 
                          ++
  Glyma.20G153700.1.p 170 SQ 171
                          86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.9E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.385161IPR002100Transcription factor, MADS-box
CDDcd002651.25E-39272No hitNo description
SuperFamilySSF554551.12E-31274IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-30323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003194.1E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-302338IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-303859IPR002100Transcription factor, MADS-box
PfamPF014864.8E-1983170IPR002487Transcription factor, K-box
PROSITE profilePS5129713.50788182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGRGKVVLER IQNKINRQVT FSKRRNGLLK KAFELSVLCD AEIALIIFSS RGKLFQYSST  60
DINRIIDKYR QCCFNMSQTG DVTEHQSEQC LYQELLILRV KHESLQRTQR NLLGEELEPL  120
SMKELHSLEK QLDRTLGQAR KHLTQKLISR IDELHGKVHN LEQVNKHLES QERGKCTQTC  180
EGSANSHIRL QDAQVNQFES ETTGSFRLQQ EQTTASKGKE SSHNINILRL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-25169169MEF2C
5f28_B4e-25169169MEF2C
5f28_C4e-25169169MEF2C
5f28_D4e-25169169MEF2C
6byy_A4e-25169169MEF2 CHIMERA
6byy_B4e-25169169MEF2 CHIMERA
6byy_C4e-25169169MEF2 CHIMERA
6byy_D4e-25169169MEF2 CHIMERA
6bz1_A4e-25169169MEF2 CHIMERA
6bz1_B4e-25169169MEF2 CHIMERA
6bz1_C4e-25169169MEF2 CHIMERA
6bz1_D4e-25169169MEF2 CHIMERA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.288030.0meristem| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the floral meristem, lodicule, palea, lemma, receptacle, empty glume, stamen, pistil, and ovule. {ECO:0000269|PubMed:19820190}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Plays minor but redundant roles with MADS6 in floral development. {ECO:0000269|PubMed:19820190}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G153700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0987530.0BT098753.1 Soybean clone JCVI-FLGm-12N24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556082.11e-167truncated transcription factor CAULIFLOWER A isoform X2
RefseqXP_028220905.11e-167truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotQ7XUN23e-62MAD17_ORYSJ; MADS-box transcription factor 17
TrEMBLA0A445F5D21e-165A0A445F5D2_GLYSO; MADS-box transcription factor 17 isoform A
TrEMBLI1NGN51e-165I1NGN5_SOYBN; Uncharacterized protein
STRINGGLYMA20G29250.11e-166(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132231730
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24260.19e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Duan Y, et al.
    Characterization of Osmads6-5, a null allele, reveals that OsMADS6 is a critical regulator for early flower development in rice (Oryza sativa L.).
    Plant Mol. Biol., 2012. 80(4-5): p. 429-42
    [PMID:22933119]
  2. Hu Y, et al.
    Interactions of OsMADS1 with Floral Homeotic Genes in Rice Flower Development.
    Mol Plant, 2015. 8(9): p. 1366-84
    [PMID:25917758]
  3. Bai X, et al.
    Regulatory role of FZP in the determination of panicle branching and spikelet formation in rice.
    Sci Rep, 2016. 6: p. 19022
    [PMID:26744119]