PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G136400.1.p
Common NameGLYMA_20G136400, LOC100779916
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 240aa    MW: 26657.7 Da    PI: 10.4396
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G136400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.73.1e-231664149
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                         k+ +n+sn qvtfskRr g++KKA+EL++LC+a+va+i+fs+  k++ +
  Glyma.20G136400.1.p 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSF 64
                         5689***************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-34867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006624.992868IPR002100Transcription factor, MADS-box
CDDcd002651.02E-37978No hitNo description
SuperFamilySSF554554.97E-29985IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-201030IPR002100Transcription factor, MADS-box
PfamPF003198.2E-251864IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSGPKKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALIVFSPGEK  60
VFSFGHPNVD AVIDRYLERA PPTESFMEAH RMAHVRDLNA QLTQISNHLD AGRKRAEELN  120
LMKKEAQAHL WWARPVDGMS MAQMKQFKAA LEELKKQVAR LADRAMLQSV TNPTHEFFPA  180
AGVSSSSSSN SNSNPLSPQV FSPHLIQPPM LQNFMSMMPR HHGFNYMGMG GYGPAAGFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-18985278MEF2 CHIMERA
6byy_B5e-18985278MEF2 CHIMERA
6byy_C5e-18985278MEF2 CHIMERA
6byy_D5e-18985278MEF2 CHIMERA
6bz1_A5e-18985278MEF2 CHIMERA
6bz1_B5e-18985278MEF2 CHIMERA
6bz1_C5e-18985278MEF2 CHIMERA
6bz1_D5e-18985278MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}.
UniprotTISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G136400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555306.11e-180agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-57AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLI1NG491e-178I1NG49_SOYBN; Uncharacterized protein
STRINGGLYMA20G27320.11e-179(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-59AGAMOUS-like 62
Publications ? help Back to Top
  1. Xu W, et al.
    Endosperm and Nucellus Develop Antagonistically in Arabidopsis Seeds.
    Plant Cell, 2016. 28(6): p. 1343-60
    [PMID:27233529]
  2. Figueiredo DD,Batista RA,Roszak PJ,Köhler C
    Auxin production couples endosperm development to fertilization.
    Nat Plants, 2015. 1: p. 15184
    [PMID:27251719]
  3. Figueiredo DD,Batista RA,Roszak PJ,Hennig L,Köhler C
    Auxin production in the endosperm drives seed coat development in Arabidopsis.
    Elife, 2017.
    [PMID:27848912]
  4. Fiume E,Coen O,Xu W,Lepiniec L,Magnani E
    Growth of the Arabidopsis sub-epidermal integument cell layers might require an endosperm signal.
    Plant Signal Behav, 2017. 12(8): p. e1339000
    [PMID:28613109]
  5. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]