PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G133000.1.p | ||||||||
Common Name | GLYMA_20G133000, LOC100816269 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 172aa MW: 18744.7 Da PI: 8.0672 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.3 | 6.6e-30 | 2 | 102 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C++dC+l+ ++ p++q++++ +v+k+FG+++++++l+++p ++r+++++sl+yeA r+ +Pv+Gavg+++++++ Glyma.20G133000.1.p 2 SCNGCRVLRKGCSDDCMLRHCLvwienPQAQAHATLFVAKFFGRATLMSFLSSVPSNQRSALFQSLLYEAVGRTINPVNGAVGLLWTGNW 91 6***************************************************************************************** PP DUF260 86 qleqlkaelal 96 +l+q+ +e +l Glyma.20G133000.1.p 92 HLCQMGVEKVL 102 ****9887665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 17.474 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-27 | 2 | 99 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MSCNGCRVLR KGCSDDCMLR HCLVWIENPQ AQAHATLFVA KFFGRATLMS FLSSVPSNQR 60 SALFQSLLYE AVGRTINPVN GAVGLLWTGN WHLCQMGVEK VLRGGAALTP LPQVITSVER 120 VMVGGEIIMC HQPKKQHVGT PPEEESEIST FGSRPLDSAP QSQTNLLTLF F* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G133000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235177 | 0.0 | AC235177.1 Glycine max strain Williams 82 clone GM_WBb0007H11, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555291.1 | 1e-125 | LOB domain-containing protein 38 | ||||
Refseq | XP_028219492.1 | 1e-125 | LOB domain-containing protein 38-like | ||||
Swissprot | Q9FN11 | 3e-58 | LBD37_ARATH; LOB domain-containing protein 37 | ||||
Swissprot | Q9SN23 | 3e-58 | LBD38_ARATH; LOB domain-containing protein 38 | ||||
TrEMBL | A0A445F4N4 | 1e-124 | A0A445F4N4_GLYSO; LOB domain-containing protein 37 | ||||
TrEMBL | I1NG19 | 1e-124 | I1NG19_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G26910.1 | 1e-125 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67420.1 | 1e-60 | LOB domain-containing protein 37 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G133000.1.p |
Entrez Gene | 100816269 |
Publications ? help Back to Top | |||
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