PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G130800.1.p
Common NameGLYMA_20G130800, LOC100811458
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-PHD
Protein Properties Length: 821aa    MW: 90406.8 Da    PI: 4.7947
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G130800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.55.5e-146867311156
                          HHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox  11 qleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                           +++L + F++n+yp+++++e LA++lgLt +qV  WF N R   +
  Glyma.20G130800.1.p 686 VVQRLHKSFKENQYPDRSTKESLAQELGLTYQQVAKWFDNTRWSFR 731
                          6799**************************************8766 PP
2PHD38.13.6e-13344399151
                          SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                  PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                          +C+ C++    ++++++lCdg C++ fH+ Cl+++l +e++p g   wlC+ C++k
  Glyma.20G130800.1.p 344 FCAKCQSkeLSTNNDIILCDGvCDRGFHQLCLDPPLLTEDIPPGdeGWLCPGCDCK 399
                          699***977777********77********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.21E-13334402IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.101.2E-12341398IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.772342399IPR019787Zinc finger, PHD-finger
CDDcd155045.59E-29344396No hitNo description
PfamPF006281.1E-10344399IPR019787Zinc finger, PHD-finger
SMARTSM002495.8E-10344397IPR001965Zinc finger, PHD-type
PROSITE patternPS013590345396IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS5007113.896673733IPR001356Homeobox domain
SMARTSM003891.8E-13675737IPR001356Homeobox domain
SuperFamilySSF466891.88E-13675736IPR009057Homeodomain-like
PfamPF000461.6E-11686731IPR001356Homeobox domain
CDDcd000867.26E-13687734No hitNo description
Gene3DG3DSA:1.10.10.602.4E-14687737IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 821 aa     Download sequence    Send to blast
MASPTGELTS HNDSTAEPMA TEQCELSEKT PQIGSEGLER EQKELLTELT SFVIDEKSNQ  60
VSADVTENSV IQLPAPPQHD FEKNCQTVEG SCLEQSTVEQ VSVDLSNDKS ENKCKPLSEN  120
VQSEPVESIP AFVVDGQMQS SPAQANMSSV NELLDQPSGD VVNNITNCSE KMSNSPSHSQ  180
SRRKGKRNSK LLKKKYMLRS LGSSGRALRS RTKEKPKEPE PTSNLVDGNS NDGVKRKSGR  240
KKKKRREEGI TDQFSRIRSH LRYLLNRISY ENSLIDAYSG EGWKGYSMEK LKPEKELQRA  300
KSEILRRKLK IRDLFRNLDS LCAEGKFPES LFDSAGEIDS EDIFCAKCQS KELSTNNDII  360
LCDGVCDRGF HQLCLDPPLL TEDIPPGDEG WLCPGCDCKD DCMDLVNDSF GTSLSISDTW  420
ERVFPEAASF AGNNMDNNLG LPSDDSDDDD YNPNGSDDVK IEGDESSSDE SEYASASEKL  480
EGGSHEDQYL GLPSEDSDDG DYDPDAPDVD CKVNEESSSS DFTSDSEDLA AAFEDNTSPG  540
QDGGINSSKK KGKVGKLSMA DELSSLLEPD SGQGGPTPVS GKRHVERLDY KKLYEETYHS  600
DTSDDEDWND AAAPSRKKKL TGNVTPVSPN ANASNNSIHT LKRNAHQNKV ENTNSSPTKS  660
LDGRSKSGSR DKRSGSSAHK RLGEAVVQRL HKSFKENQYP DRSTKESLAQ ELGLTYQQVA  720
KWFDNTRWSF RHSSQMETNS GRNASPEATD GRAENEGEKQ CESMSPEVSG KNSKTTSSRK  780
RKHLSEPLSE AQLDINGLAT SSPNVHQTQV GNKMKTRKRK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244RKKKKR
2239245RKKKKRR
3239246RKKKKRRE
4240245KKKKRR
5241245KKKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.78730.0cotyledon| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G130800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0909550.0BT090955.1 Soybean clone JCVI-FLGm-5D8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555282.10.0homeobox protein HAT3.1 isoform X1
RefseqXP_028221288.10.0homeobox protein HAT3.1-like
TrEMBLA0A445F4E70.0A0A445F4E7_GLYSO; Homeobox protein HAZ1 isoform A
TrEMBLK7N3780.0K7N378_SOYBN; Uncharacterized protein
STRINGGLYMA20G26700.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Representative plantOGRP18301539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-94Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain