PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G115600.1.p
Common NameGLYMA_20G115600, LOC100817528
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CO-like
Protein Properties Length: 419aa    MW: 46748.2 Da    PI: 5.6756
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G115600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box261.9e-081760340
             zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                         +r C+ +  k+++++C  ++ +lC+ C ++ H        H++v
  Glyma.20G115600.1.p 17 ARACDGCITKRARWYCAADDAFLCQACDSSVHLAnplarrHERV 60
                         578*****************************444666667766 PP
2CCT68.12.4e-23363406144
                  CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                          Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Glyma.20G115600.1.p 363 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 406
                          9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003363.1E-91562IPR000315B-box-type zinc finger
PROSITE profilePS5011910.6651562IPR000315B-box-type zinc finger
PfamPF006431.6E-61760IPR000315B-box-type zinc finger
CDDcd000216.80E-91862No hitNo description
PROSITE profilePS5101716.083363405IPR010402CCT domain
PfamPF062036.9E-18363405IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MSSATKNAAN AVGGKTARAC DGCITKRARW YCAADDAFLC QACDSSVHLA NPLARRHERV  60
RLKTASYKST DERRQPPTWH TKKPRTPRHG KHSRNNNPFH LVPEEGSEEA NSHDENEEQL  120
VYRVPIVDPF VAELCGTNSS PSSVTSTDQG VVAAAAAASA EVEYKGIQSN DFCSNSNEIE  180
NLHGMLPSDA ELAEFAADVE SFLGRGLENK CVGMEELGLV DTKEEECSVG SGKVKVEEEE  240
SPLMEMDMGR DDQSFELSFD YETCEEVKEM KVSDLELGNE LGEMKENDDD EVKRKKVSLQ  300
LDYEAIIIAW ASQKSPWTTA DKQNLDPDEC WHQCMGSCGT AFHHPYGELG GFGIHSVIVD  360
GGREARVSRY REKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRASFAP PTFPLLNK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1373389RRTRLFSKKIRYEVRKL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.247290.0cotyledon| leaf| seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G115600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM0689040.0HM068904.1 Glycine max CONSTANS-like zinc finger protein (COL22) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555902.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLI1NFI80.0I1NFI8_SOYBN; Uncharacterized protein
STRINGGLYMA20G24940.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-99B-box type zinc finger protein with CCT domain