PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G115300.1.p | ||||||||
Common Name | GLYMA_20G115300, LOC102660769 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 369aa MW: 40000.1 Da PI: 4.3891 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.8 | 5.7e-18 | 119 | 167 | 2 | 54 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 +++GVr++k +g+W+AeIrd + + +r++lg+f taeeA +a++a r+++e Glyma.20G115300.1.p 119 KFRGVRQRK-WGKWAAEIRDpF-----QsTRIWLGTFNTAEEASQAYEARRLEFE 167 79******9.**********55.....45*******************9999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.5E-21 | 119 | 166 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.4E-11 | 119 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.216 | 119 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-16 | 119 | 166 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.9E-17 | 119 | 182 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.01E-22 | 119 | 166 | No hit | No description |
PRINTS | PR00367 | 3.1E-10 | 120 | 131 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-10 | 142 | 158 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MPESRKQPAS RPKQKLHHHS LQESKAMRKL RIICDDPDAT DSSEDETEKV QSPRRVKRNV 60 SEISLPPLPP PFTTTPETSS CEVNSGKNAT LKGFIEGQPQ SKKRVLTHPP STRRNTSGKF 120 RGVRQRKWGK WAAEIRDPFQ STRIWLGTFN TAEEASQAYE ARRLEFEAMA EAQAYKTSSV 180 SEPLATISDN KSNCCNSSAA AISAAAVSAA DVSVSEKFST TFDDLEESVL SHNSPSSVLE 240 LDTLASKSLE KGNVSTEEAI EANDLVAELA GLEVPDVSLL NLLPPPSDSG GAAAAVSSGI 300 EPNFGLDFDW LSFNDYGQGF DDFGGLEDIH IGGFDDNEPT ELPDFDFGDF GADEFAGWIE 360 EPLNIPCA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-11 | 118 | 160 | 13 | 56 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.40057 | 0.0 | pod |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G115300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605899.2 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_014628315.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_014628316.1 | 0.0 | ethylene-responsive transcription factor ERF118 | ||||
Refseq | XP_028221609.1 | 0.0 | ethylene-responsive transcription factor ERF118-like | ||||
Refseq | XP_028221610.1 | 0.0 | ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | I1NFI5 | 0.0 | I1NFI5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G24920.4 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2690 | 34 | 72 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 2e-26 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G115300.1.p |
Entrez Gene | 102660769 |