PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G103400.1.p | ||||||||
Common Name | GLYMA_20G103400, LOC100800443 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 243aa MW: 25768.9 Da PI: 10.0992 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125.7 | 5e-39 | 28 | 201 | 2 | 118 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.. 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+++++tgt++++as++ s ss +s+s + Glyma.20G103400.1.p 28 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSVIAATGTGTIPASFSsV--SLSSPSSTS--Dyk 113 78*******************************************************************77731..222222222..133 PP TCP 89 ..........................................................kaaksaakskksqksaasalnlakesraka 118 +aa++ + + +q+++++a+ +a+++r+++ Glyma.20G103400.1.p 114 pqllaptpfilgkrirtdedsskdeavsvgpslvgpyappgpgvvpawpdfgqiwsfvAAAAAPEMVSVPQQQQQQASLFAHHHRQQQ 201 5667778888888888888888889999999999999999999999999999999998444444455555555555577777777654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 4.1E-34 | 34 | 172 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.35 | 34 | 88 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSNSDGTTNG AITEAQRQQQ QQGGKALAVK KPPSKDRHSK VDGRGRRIRM PIICAARVFQ 60 LTRELGHKSD GQTIEWLLRQ AEPSVIAATG TGTIPASFSS VSLSSPSSTS DYKPQLLAPT 120 PFILGKRIRT DEDSSKDEAV SVGPSLVGPY APPGPGVVPA WPDFGQIWSF VAAAAAPEMV 180 SVPQQQQQQA SLFAHHHRQQ QQLAIGEALA ARVGNYLPGH LNLLASLSGG PGNSGRRDDE 240 PR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G103400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605845.1 | 1e-177 | transcription factor TCP7 | ||||
Swissprot | Q9FMX2 | 2e-85 | TCP7_ARATH; Transcription factor TCP7 | ||||
TrEMBL | I1NF57 | 1e-175 | I1NF57_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G23700.1 | 1e-176 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5469 | 31 | 53 | Representative plant | OGRP8514 | 10 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23280.1 | 1e-75 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G103400.1.p |
Entrez Gene | 100800443 |