PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G099400.1.p
Common NameGLYMA_20G099400, LOC100817342
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WOX
Protein Properties Length: 285aa    MW: 32167.9 Da    PI: 6.9419
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G099400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.96.4e-2297157257
                          T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                          r+R+t+t+ ql++Le+ F + n +ps+e+++e++++l    +++e++V++WFqNrRa+ k+
  Glyma.20G099400.1.p  97 RQRWTPTPVQLQILERIFDQgNGTPSKEKIKEITAELgqhgQISETNVYNWFQNRRARSKR 157
                          89*****************99**************************************97 PP
2Wus_type_Homeobox101.27.6e-3396158264
    Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                          +r+RWtPtp Q++iLe+++++G  tP+ke+i++itaeL ++G+i+++NV++WFQNr+aR++++
  Glyma.20G099400.1.p  96 SRQRWTPTPVQLQILERIFDQGNGTPSKEKIKEITAELGQHGQISETNVYNWFQNRRARSKRR 158
                          789**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.8E-1891160IPR009057Homeodomain-like
PROSITE profilePS5007115.28993158IPR001356Homeobox domain
SMARTSM003891.1E-1595162IPR001356Homeobox domain
SuperFamilySSF466891.15E-1995160IPR009057Homeodomain-like
CDDcd000861.71E-1497158No hitNo description
PfamPF000469.3E-2097157IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MVNVVELQKQ LQRWQQSGNV NVNVNVDANG ELMYVKVMTD EQLETLRKQI AVYGTICEQL  60
IEMHRTLSAQ QDLAGVRLGN IYCDQLMTSG GHKITSRQRW TPTPVQLQIL ERIFDQGNGT  120
PSKEKIKEIT AELGQHGQIS ETNVYNWFQN RRARSKRRLQ NVAPSNTESE VDTEVDSKNK  180
KTKAEEEFQS QHNITTSGGA EKLCFQNPQV YSDHLHYLNP DSNKPYSMFQ SDCNLKSTRN  240
SSHVSVFNEM LSNSRSEYVG GKMEVGGSVS YNLFHQTGDC NLAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.415370.0pod
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G099400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003555817.10.0WUSCHEL-related homeobox 13
SwissprotO817881e-79WOX13_ARATH; WUSCHEL-related homeobox 13
TrEMBLA0A0B2QNY00.0A0A0B2QNY0_GLYSO; WUSCHEL-related homeobox 13
TrEMBLK7N2N10.0K7N2N1_SOYBN; Uncharacterized protein
STRINGGLYMA20G23220.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18553493
Representative plantOGRP18731639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35550.18e-82WUSCHEL related homeobox 13
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]