PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G075400.1.p
Common NameGLYMA_20G075400
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 258aa    MW: 28827.6 Da    PI: 7.193
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G075400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer79.73.6e-2559113358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                          + +Y+eClkNh +++G h++DGC  f+p  geegt +alkC  C+CHRnFHR+e+ 
  Glyma.20G075400.1.p  59 NEKYHECLKNHTIKTGVHTLDGCIKFLPL-GEEGTLDALKCLVCNCHRNFHRKETP 113
                          578*************************9.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-1661112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015665.0E-2261111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047706.2E-2561112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.98762111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.96E-17175246IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-26177247IPR009057Homeodomain-like
TIGRFAMsTIGR015656.2E-22188244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MEFKQHEETE LRMPTPTASH DDFGIPPSSQ GEEELVAAVI PVVIPVTPTP PTLAQNNDNE  60
KYHECLKNHT IKTGVHTLDG CIKFLPLGEE GTLDALKCLV CNCHRNFHRK ETPNDTYLVP  120
YYYHHSSLPL AAYYGEQVGY PRVQGQQCTT LALPSRSRGS GGAQSSREDM EAVSDPTSGA  180
TPHGGSNKKR FRTRFTQEQK EKMLAFVEKL GWRILKHDDS VVQEFCAQTS IQPHVLKVWV  240
HNNKHTLVTI IATTIRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-241892461875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G075400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351410.0AC235141.1 Glycine max strain Williams 82 clone GM_WBa0071B20, complete sequence.
GenBankAC2351610.0AC235161.1 Glycine max strain Williams 82 clone GM_WBa0098D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556881.10.0zinc-finger homeodomain protein 2
SwissprotA2Z2595e-53ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0R0EJK60.0A0A0R0EJK6_SOYBN; Uncharacterized protein
STRINGGLYMA20G18460.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.14e-54homeobox protein 22