PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G075300.1.p
Common NameGLYMA_20G075300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 257aa    MW: 28591.3 Da    PI: 7.1243
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G075300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer78.96.6e-2559112357
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 
                          + +Y+eClkNh +++G h++DGC  f+p  geegt +alkC  C+CHRnFHR+e+
  Glyma.20G075300.1.p  59 NEKYHECLKNHTIKTGVHTLDGCIKFLPL-GEEGTLDALKCLMCNCHRNFHRKET 112
                          578*************************9.999********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015667.1E-2261111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.0E-2461112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1661112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152320.93462111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466894.3E-17174244IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.4E-27177246IPR009057Homeodomain-like
TIGRFAMsTIGR015651.6E-23187244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEFKHHEETE LRMPAATTSY DDFGIPPSSQ GEEEPVAAAI PVAIPMTPTP PTLAQNNDNE  60
KYHECLKNHT IKTGVHTLDG CIKFLPLGEE GTLDALKCLM CNCHRNFHRK ETPNYTYLVP  120
YYRHSPLPLA AYYGEQVGYP HVQGQQCTTL ALPSRSRGSG GAQSSREDIE AVSDPTSGAT  180
PHGGSSKKRF RTRFTQEQKE KMLAFAEKLG WRILKHDESA VQEFCAETSI QPHVLKVWVN  240
NNKNTLVTII ATTIRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-251862451675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G075300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351410.0AC235141.1 Glycine max strain Williams 82 clone GM_WBa0071B20, complete sequence.
GenBankAC2351610.0AC235161.1 Glycine max strain Williams 82 clone GM_WBa0098D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556880.10.0zinc-finger homeodomain protein 2
SwissprotA2Z2591e-54ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0R0EGV30.0A0A0R0EGV3_SOYBN; Uncharacterized protein
STRINGGLYMA02G31190.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.11e-55homeobox protein 22