PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G062300.1.p
Common NameGLYMA_20G062300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 263aa    MW: 29288.1 Da    PI: 6.8374
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G062300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.71.3e-13108148445
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          W ++E++ll+++++ +G g+W+ +a+++g ++t  qc+++++
  Glyma.20G062300.1.p 108 WNADEELLLLEGIETYGFGNWNEVAEYVG-TKTKSQCIDHYN 148
                          *****************************.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM002912.6E-104489IPR000433Zinc finger, ZZ-type
CDDcd023358.29E-264896No hitNo description
SuperFamilySSF578502.24E-1548111No hitNo description
PfamPF005693.3E-94888IPR000433Zinc finger, ZZ-type
PROSITE profilePS5013510.6664891IPR000433Zinc finger, ZZ-type
PROSITE patternPS0135705077IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.44E-13100154IPR009057Homeodomain-like
PROSITE profilePS5129322.089103155IPR017884SANT domain
SMARTSM007171.2E-12104153IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-9107150IPR009057Homeodomain-like
PfamPF002491.7E-13107148IPR001005SANT/Myb domain
CDDcd001671.37E-7119148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MGRSRVALRS ADDDPNHRSK RKKAALNVEN SETLPTGQGV TTSKVSLYHC NYCNKDISGK  60
IRIKCAVCQD FDLCLECFSV GAEVTPHKSN HPYRIMDNLS FPLICTDWNA DEELLLLEGI  120
ETYGFGNWNE VAEYVGTKTK SQCIDHYNAV YMNSPCFPLP DLSHVMGKNK VELCAMAKGH  180
EAKKEFSLTA ELTLKEEALF TDRINYEESK NAEINNQTMS RLTSACGKAY PSTIKKASNV  240
IQNNGGVKVE GTWDGATDWR RI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C4e-36481635120Transcriptional adapter 2
6cw3_E3e-36481635120Transcriptional adapter 2
6cw3_G3e-36481635120Transcriptional adapter 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G062300.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150383e-64AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006605590.10.0transcriptional adapter ADA2
RefseqXP_028219481.10.0transcriptional adapter ADA2-like isoform X2
SwissprotQ75LL61e-95TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLA0A0R0E7P80.0A0A0R0E7P8_SOYBN; Uncharacterized protein
STRINGGLYMA20G06615.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15371726
Representative plantOGRP2480912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]