PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G047600.1.p | ||||||||
Common Name | GLYMA_20G047600, LOC100818609 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 522aa MW: 57986.4 Da PI: 5.3596 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.4 | 1e-15 | 40 | 87 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +lv++ k++G g+W+++ ++ g+ R++k+c++rw ++l Glyma.20G047600.1.p 40 KGPWTAAEDAILVEYAKKHGQGNWNAVHKYSGLARCGKSCRLRWANHL 87 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 50.4 | 5.1e-16 | 93 | 136 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g +T+eE+ +++++++++G++ W++ a++++ gRt++++k++w++ Glyma.20G047600.1.p 93 KGEFTAEEENRILELHAKMGNK-WARMAAELP-GRTDNEIKNYWNT 136 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.611 | 35 | 87 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.76E-29 | 37 | 134 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.1E-13 | 39 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-14 | 40 | 87 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.3E-23 | 41 | 94 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.42E-10 | 42 | 87 | No hit | No description |
PROSITE profile | PS51294 | 24.25 | 88 | 142 | IPR017930 | Myb domain |
SMART | SM00717 | 4.5E-16 | 92 | 140 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-15 | 93 | 136 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.97E-12 | 95 | 136 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-25 | 95 | 140 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 522 aa Download sequence Send to blast |
MSSVTSGGDN RKISKGRRSS SLEEEAGVGG NIRGESPLKK GPWTAAEDAI LVEYAKKHGQ 60 GNWNAVHKYS GLARCGKSCR LRWANHLRPD LKKGEFTAEE ENRILELHAK MGNKWARMAA 120 ELPGRTDNEI KNYWNTRIKR MQRAGLPIYP EELCQRILNC NQESQNISIL SNEASQHGDL 180 SQTDFDIPDV EFKIFKFRHG LSHGQSIFDM PESSLFDQSS DSSHSYNLFP TMRPTKRPRE 240 SEMLYDSFES CTINAAPLFD QYDNYTSEKI SDHPRLSLPR DPVLNTNDQF NGDNLTGSHA 300 ALNGNASSSV PMFRAMKLEL PSLQYPETQH GSWGTPTSPL PSLESVDTLI QSPVVEPILL 360 DPISPQSSGL LEAIVHNSKS LKGSNNDLLL QETIGTTNEV AKSSTLNHSF QTKWYELGEP 420 NSPFGQSAAS VLIEYTPVSM CSVDGPQSIE TTQDHDDKHE ALTTQFPDSS RKKKNILKQM 480 DYTQPDALLD LGWFGNSTEY GSDQSVLQDA LSALLGEDCQ R* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 34 | 140 | 1 | 106 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30266 | 0.0 | leaf| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G047600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014628523.1 | 0.0 | transcription factor MYB33 isoform X1 | ||||
TrEMBL | K7N1M2 | 0.0 | K7N1M2_SOYBN; MYB transcription factor MYB521 | ||||
STRING | GLYMA20G11040.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06100.3 | 2e-86 | myb domain protein 33 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G047600.1.p |
Entrez Gene | 100818609 |