PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G037100.1.p

Common Name

GLYMA_20G037100, LOC100815750

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 341aa MW: 36080.5 Da PI: 7.5825

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G037100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212	1.5e-65	113	274	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 gt++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpa++rrerq + aa+ a s+ a++ +k++r ++q+++++++ Glyma.20G037100.1.p 113 GGTSTCQDCGNQAKKDCSHRRCRTCCKSRGFDCSTHVKSTWVPASRRRERQLKGVAAAGAAVGSNgATSGAKKPRLV--ASQTTSHTSTS 200 57899*******************************************877666655555444367777777765..45555555555 PP DUF702 92 ssaeskkeletss..........lPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154 ++++++++++t lP++v+++avf+cvrv+svdd ge+e+aYq++v+igGhvfkG+LydqG+e+ Glyma.20G037100.1.p 201 NNTTPPRSFDTGCspqdvgfkesLPSQVRAPAVFKCVRVTSVDDgGEDEYAYQAVVKIGGHVFKGFLYDQGVED 274 66777788887767889999999*****************899***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	5.2E-62	115	273	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.7E-27	117	159	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.9E-29	224	272	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MWPGVSRSFN YNLAPHHDIF VVAPASSFYH HHNDVVLSDP NNNNGSNNSN NPATAHGVNV 60 FPLLTATPCL ESEGIMGNIS HHRNRIQLWQ EHESSPPQQQ QGHMERDTCG DGGGTSTCQD 120 CGNQAKKDCS HRRCRTCCKS RGFDCSTHVK STWVPASRRR ERQLKGVAAA GAAVGSNGAT 180 SGAKKPRLVA SQTTSHTSTS NNTTPPRSFD TGCSPQDVGF KESLPSQVRA PAVFKCVRVT 240 SVDDGGEDEY AYQAVVKIGG HVFKGFLYDQ GVEDKEGYPN LSELHLSGGG GGNVTSGSDG 300 GRNGISSSSP MVDRSHDVYA ASGGGLLLGG SSNYGNHPIN *

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.43871	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during the early stages of root primordium development and disappears prior to the emergence of lateral roots from the parent root. {ECO:0000269\|PubMed:7647564}.
Uniprot	TISSUE SPECIFICITY: Restricted to lateral root primordia. {ECO:0000269\|PubMed:7647564}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G037100.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025983159.1	0.0	protein LATERAL ROOT PRIMORDIUM 1
Refseq	XP_028220193.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	5e-80	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A445F0C8	0.0	A0A445F0C8_GLYSO; Protein LATERAL ROOT PRIMORDIUM 1 isoform A
TrEMBL	K7N188	0.0	K7N188_SOYBN; Uncharacterized protein
STRING	GLYMA20G05015.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6504	33	51
Representative plant	OGRP1313	15	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	8e-66	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Glyma.20G037100.1.p
Entrez Gene	100815750

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]