PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G035300.1.p
Common NameGLYMA_20G035300, LOC100805252
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 335aa    MW: 37386.2 Da    PI: 6.353
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G035300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.91.7e-312175155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLH+rF ea++qLGG+ekAtPk+++++m+++gLtl+h+kSHLQkYRl
  Glyma.20G035300.1.p 21 KPRLKWTPELHQRFTEAINQLGGAEKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 75
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-301976IPR009057Homeodomain-like
SuperFamilySSF466894.12E-162076IPR009057Homeodomain-like
TIGRFAMsTIGR015574.0E-222176IPR006447Myb domain, plants
PfamPF002498.6E-82374IPR001005SANT/Myb domain
PfamPF143791.9E-22119164IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MDLQNVQNQS MMRLVLSTDA KPRLKWTPEL HQRFTEAINQ LGGAEKATPK SLMRVMGIPG  60
LTLYHLKSHL QKYRLGKSQP LETCSDNKQE GYSEIQNSDG HCSKEISIGT QNQMTESLKI  120
AEALQMQMEV QRKLYEQIEV QKHLQLRIEA QGKYLQSVLT KAHEALARHS SSTTGVELAK  180
FELSLLVSII NNACPSSPIS ELTETRGLSL NCGERKQDRG TMCSLESSLT SSESSEQQHI  240
MDEAENPQKF DGVSVELPLI SIHPAEVKAF KGDTSVDGRK RSAETDSDHC VDQPCGNKKL  300
RKSEVSQMLD LNSQYQRDID SSVKEIDLNF SSSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-212077158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.341470.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G035300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0981690.0BT098169.1 Soybean clone JCVI-FLGm-12I23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556805.10.0myb family transcription factor PHL8
SwissprotF4I2741e-75PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLI1NDP80.0I1NDP8_SOYBN; Uncharacterized protein
STRINGGLYMA20G04630.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.12e-76G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]