PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G034100.1.p
Common NameGLYMA_20G034100, LOC100804537
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 487aa    MW: 54109.3 Da    PI: 6.7675
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G034100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.4e-16138183147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg W + Ed +l+++v+++G+ +W++Ia+++  gR++k+c++rw++ 
  Glyma.20G034100.1.p 138 RGHWRPAEDSKLKELVALYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 183
                          899*****************************.***********996 PP
2Myb_DNA-binding55.31.5e-17190233146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          r ++++eE+e+l +a++ +G++ W+ Iar ++ gRt++ +k++w+ 
  Glyma.20G034100.1.p 190 RRAFSEEEEERLMQAHRIYGNK-WAMIARLFP-GRTDNAVKNHWHV 233
                          678*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.17133184IPR017930Myb domain
SMARTSM007172.9E-14137186IPR001005SANT/Myb domain
PfamPF002491.1E-15138183IPR001005SANT/Myb domain
SuperFamilySSF466899.73E-28138231IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-25139191IPR009057Homeodomain-like
CDDcd001674.21E-13141182No hitNo description
PROSITE profilePS5129426.929185239IPR017930Myb domain
SMARTSM007171.8E-14189237IPR001005SANT/Myb domain
PfamPF002493.0E-14190232IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-20192238IPR009057Homeodomain-like
CDDcd001671.26E-11192232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MKAWPARVIY PSSQENTNSL TRYPSSSSHS SSPPSMGMVY ADMDSLSLCS HYGTVVSSHH  60
QDCYVSNGGT NWGFPFMREC PNNSDDVAEE EEGKGSDSST GEDSDKVNHH ANNSNDENNP  120
NENNSNSGGS GHSKLCARGH WRPAEDSKLK ELVALYGPQN WNLIAEKLEG RSGKSCRLRW  180
FNQLDPRINR RAFSEEEEER LMQAHRIYGN KWAMIARLFP GRTDNAVKNH WHVIMARKYR  240
EQSSAYRRRR LSQSSSVYRR VDEINTTITT TNSIVVSRDT EQQAPPPPPY CVNLSNNGGL  300
ANNIINNNNN INMMSSFPYA AASFHGGVVP SSGGIEFGLN SSPHMTTAKE PFSTTKLAPP  360
HIALYPQQTS LDFFSGVRSS SDMVGEYFGQ NLHHQQQQPS SGFYPQYPQY VMLMNHHHQQ  420
NNHNNFYGFS NSTSQILLGH SEASLSSSVA AEEHRDHQNL SSDQCPPDAT TTIPPPFIDF  480
LGVGAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-331382387107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1245250YRRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G034100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556730.10.0myb-like protein Q
TrEMBLK7N1630.0K7N163_SOYBN; Uncharacterized protein
STRINGGLYMA20G04511.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.16e-75myb domain protein 105