PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G030500.1.p | ||||||||
Common Name | GLYMA_20G030500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 164aa MW: 17896.1 Da PI: 8.4799 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.8 | 1.5e-30 | 1 | 60 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK+ kg+++pr+YYrCt + +C v+k+v+r+ae+ +++++tYeg+Hnh+ Glyma.20G030500.1.p 1 MNDGCHWRKYGQKMAKGNPCPRAYYRCTASpSCLVRKQVQRCAEEMSILITTYEGTHNHP 60 58**************************999****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118290 | 2.75E-26 | 1 | 62 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 28.082 | 1 | 62 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.2E-35 | 1 | 61 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.1E-29 | 2 | 62 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-26 | 2 | 60 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MNDGCHWRKY GQKMAKGNPC PRAYYRCTAS PSCLVRKQVQ RCAEEMSILI TTYEGTHNHP 60 LPMSATTMAC TTSAAASMLQ SPSLSSQHGL VDSAISSIIN SSDPYYNPNN ALNFSTHQVS 120 RPQQFYFPNS SISTLNSHPT ITLDLTTPPT SSSNSSFTCM PKY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 7e-23 | 1 | 62 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 7e-23 | 1 | 62 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G030500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 2e-89 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014619828.1 | 5e-95 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028193397.1 | 5e-95 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 1e-45 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | K7N138 | 1e-117 | K7N138_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G03820.2 | 1e-118 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68150.1 | 2e-37 | WRKY DNA-binding protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G030500.1.p |
Publications ? help Back to Top | |||
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