PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G028000.1.p
Common NameGLYMA_20G028000, LOC100784936
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family WRKY
Protein Properties Length: 440aa    MW: 48009.1 Da    PI: 8.3588
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G028000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.1e-30174230259
                          --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          +DgynWrKYGqK+vkgs+f+rsYY+Ct ++Cpvkkk+ers  +++v+ i+Y+geHnh+
  Glyma.20G028000.1.p 174 NDGYNWRKYGQKHVKGSDFSRSYYKCTRPNCPVKKKLERSL-EGHVTAIIYKGEHNHQ 230
                          8****************************************.***************8 PP
2WRKY105.52.7e-33324382159
                          ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                 WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                          ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver++ dpk+v++tYeg+Hnh+
  Glyma.20G028000.1.p 324 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCKVRKHVERASMDPKAVITTYEGKHNHD 382
                          59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.8E-27159232IPR003657WRKY domain
PROSITE profilePS5081121.746168232IPR003657WRKY domain
SuperFamilySSF1182901.57E-23169232IPR003657WRKY domain
SMARTSM007746.4E-30173231IPR003657WRKY domain
PfamPF031067.7E-23174230IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.5E-37310384IPR003657WRKY domain
SuperFamilySSF1182903.01E-29316384IPR003657WRKY domain
PROSITE profilePS5081138.411319384IPR003657WRKY domain
SMARTSM007745.4E-39324383IPR003657WRKY domain
PfamPF031064.3E-26325382IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MVDGGKGEGG GEQASPPSTA ARHGTTLRPR ASVESVFSGG YSPGPMALLS NFYGDGDECK  60
SFSELLAGAM VDPTAPSPMP TTTFALPPGF IDSPSQGQFG ITHQQMLAQI SSQAVQTHSE  120
HPFSISAVSA TSSCAAQQLI PPSMPDSKVK ESLDYSHSEQ KLQSSVNVDN KPNNDGYNWR  180
KYGQKHVKGS DFSRSYYKCT RPNCPVKKKL ERSLEGHVTA IIYKGEHNHQ RPHRSKIVKE  240
TQTSNENSVS KMDLGSSQAT GEHGSGTSDS EEVDDHETEA DEKNDEPDAK RRNTEARIQD  300
PATLHRSVAE PRIIVQTTSE VNLLDDGYRW RKYGQKVVKG NPYPRSYYKC TTQGCKVRKH  360
VERASMDPKA VITTYEGKHN HDVPAAKTNS HTLANNSASQ LKAQKFAIPD VKHSSSSRGV  420
TGNEQRPVAS LRLKEEQIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-41174385878Probable WRKY transcription factor 4
2lex_A3e-41174385878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310GGKGEGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.113510.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G028000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556710.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-136WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLI1NDJ80.0I1NDJ8_SOYBN; Uncharacterized protein
STRINGGLYMA20G03410.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-139WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]