PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.20G016500.1.p | ||||||||
Common Name | GLYMA_20G016500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | Nin-like | ||||||||
Protein Properties | Length: 328aa MW: 36957.9 Da PI: 5.7609 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 54.8 | 1.9e-17 | 226 | 274 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+dls F+l+i +AA +L+v+ +++K iCR+ +kRWP+Rk++sl Glyma.20G016500.1.p 226 RMTLSDLSGVFHLTISAAAVKLDVGDSTVKSICRRGKLKRWPQRKVQSL 274 689********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 14.083 | 214 | 295 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 1.7E-16 | 227 | 274 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 328 aa Download sequence Send to blast |
MFPIDNPLLR FLFPRPKQQG NNVPFLQGNN NNDFPIGEGV VPDVVDVEEE GPPRRTGKEP 60 IPEGQGDRFF IHGHDIFFFG EGGVGNNVEP PQQNQTQPPN NQDVRSLCSW PPPPEPFSCS 120 CCEVLRQINY TNGVRFDKLE IHGAVGVINH AICLVEDKTS NRPPRDTYQI IDFCNKNTEE 180 IRNFLNVYCK ERTEAGFIPI EDPSMSAFYD ALCTGMDWTE RQRVPRMTLS DLSGVFHLTI 240 SAAAVKLDVG DSTVKSICRR GKLKRWPQRK VQSLAKKVRV LERALNSPDP GVKRRTLDEI 300 RRLQQEIIEN CGGITPTGIP MLQFDEE* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.20G016500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006606627.1 | 0.0 | uncharacterized protein LOC102660093 | ||||
Refseq | XP_006606628.1 | 0.0 | uncharacterized protein LOC102660219 | ||||
TrEMBL | A0A0R0EGQ4 | 0.0 | A0A0R0EGQ4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G01991.1 | 0.0 | (Glycine max) | ||||
STRING | GLYMA20G02005.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7478 | 28 | 46 | Representative plant | OGRP10333 | 4 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G35590.1 | 4e-07 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.20G016500.1.p |