PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.20G016400.1.p

Common Name

GLYMA_20G016400, LOC102660093, LOC102660219

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 413aa MW: 46407.6 Da PI: 4.4984

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.20G016400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	54.3	2.6e-17	311	359	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+dls F+l+i +AA +L+v+ +++K iCR+ +kRWP+Rk++sl Glyma.20G016400.1.p 311 RMTLSDLSGVFHLTISAAAVKLDVGDSTVKSICRRGKLKRWPQRKVQSL 359 689*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.493	299	380	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-16	312	359	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDNNNNNYSG FVPNNDTDDD CTFLQTLLEL DPQHFYLPTE EFVSLSLQQQ QQNDPFGVEK 60 GNNVPFLQGN NNNDFPIGEG VVPDVVDVEE EGPPRRTGKE PIPEGQGDRF FIHGHDIFFF 120 GEGGVGNNVE PPQQNQTQPP NNQDVRSLCS WPPPPEPFSC SCCEVLRQIN YTNGVRFDKL 180 EIHGAVGVIN HAICLVEDKT SNRPPRDTYQ IIDFCNKNTE EIRNFLNVYC KERTEAGFIP 240 IEDPSMSAFY DALCTGMDWT EVSNDVDDDL GPPNGTEQES ESEPEAENGR RASTSRPRRR 300 DMAVQRQRVP RMTLSDLSGV FHLTISAAAV KLDVGDSTVK SICRRGKLKR WPQRKVQSLA 360 KKVRVLERAL NSPDPGVKRR TLDEIRRLQQ EIIENCGGIT PTGIPMLQFD EE*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDNNNNNYSG FVPNNDTDDD CTFLQTLLEL DPQHFYLPTE EFVSLSLQQQ QQNDPFGVEK  60
GNNVPFLQGN NNNDFPIGEG VVPDVVDVEE EGPPRRTGKE PIPEGQGDRF FIHGHDIFFF  120
GEGGVGNNVE PPQQNQTQPP NNQDVRSLCS WPPPPEPFSC SCCEVLRQIN YTNGVRFDKL  180
EIHGAVGVIN HAICLVEDKT SNRPPRDTYQ IIDFCNKNTE EIRNFLNVYC KERTEAGFIP  240
IEDPSMSAFY DALCTGMDWT EVSNDVDDDL GPPNGTEQES ESEPEAENGR RASTSRPRRR  300
DMAVQRQRVP RMTLSDLSGV FHLTISAAAV KLDVGDSTVK SICRRGKLKR WPQRKVQSLA  360
KKVRVLERAL NSPDPGVKRR TLDEIRRLQQ EIIENCGGIT PTGIPMLQFD EE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.20G016400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006606627.1	0.0	uncharacterized protein LOC102660093
Refseq	XP_006606628.1	0.0	uncharacterized protein LOC102660219
TrEMBL	K7N0S0	0.0	K7N0S0_SOYBN; Uncharacterized protein
STRING	GLYMA20G01991.1	0.0	(Glycine max)
STRING	GLYMA20G02005.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46
Representative plant	OGRP10333	4	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	5e-07	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.20G016400.1.p
Entrez Gene	102660093 \| 102660219