PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G014400.2.p | ||||||||
Common Name | GLYMA_20G014400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 218aa MW: 24177.6 Da PI: 8.2134 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 51.9 | 1.3e-16 | 64 | 116 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq + Lee F++n++++ + e LA++l+L rqV vWFqNrRa+ k Glyma.20G014400.2.p 64 RKKLRLTKEQSRLLEESFRQNHTLNPK--ESLAMQLKLRPRQVEVWFQNRRARSK 116 78889*******************997..68**********************98 PP | |||||||
2 | HD-ZIP_I/II | 109.1 | 3.1e-35 | 64 | 150 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rl+keq++lLEesF+++++L+p K++la +L+l+prqv+vWFqnrRAR k+kq+E+++e+Lkr++ +l+e+n+rL++eveeLr+ Glyma.20G014400.2.p 64 RKKLRLTKEQSRLLEESFRQNHTLNP--KESLAMQLKLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRA 150 69***********************9..679********************************************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-16 | 46 | 116 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.07E-16 | 50 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 13.831 | 60 | 118 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-14 | 62 | 122 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.92E-15 | 63 | 119 | No hit | No description |
Pfam | PF00046 | 5.6E-14 | 64 | 116 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 93 | 116 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 6.8E-10 | 118 | 152 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 4.4E-22 | 118 | 161 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MAVLPSSSSN LELTISVPGF ASSPVLLPLS SVKELDINQV PLEEDWMASN MEDEEEGSNG 60 DPPRKKLRLT KEQSRLLEES FRQNHTLNPK ESLAMQLKLR PRQVEVWFQN RRARSKLKQT 120 EMECEYLKRW FGSLTEQNRR LQREVEELRA MKVGPPTVIS PHSCEPLPAS TLSMCPRCER 180 VTSTADKPPS AAAAAAAAAT LSPKVPPTQS RQPSAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 118 | RRARSKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G014400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015034 | 1e-78 | AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605480.1 | 1e-147 | homeobox-leucine zipper protein HOX3 | ||||
Swissprot | Q8S9N6 | 5e-79 | ATB17_ARATH; Homeobox-leucine zipper protein ATHB-17 | ||||
TrEMBL | A0A0R0EGQ3 | 1e-155 | A0A0R0EGQ3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G01770.1 | 1e-146 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G01430.1 | 4e-77 | homeobox-leucine zipper protein 17 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G014400.2.p |
Publications ? help Back to Top | |||
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