PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G013000.1.p | ||||||||
Common Name | GLYMA_20G013000, LOC100818783 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 224aa MW: 25458.8 Da PI: 9.2291 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.7 | 9.7e-17 | 13 | 60 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ed++lvd++k++G +W+t ++ g++R++k+c++rw +yl Glyma.20G013000.1.p 13 KGAWSKQEDQKLVDYIKKHGEVCWRTLPQAAGLHRCGKSCRLRWINYL 60 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 66 | 110 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg++ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++ Glyma.20G013000.1.p 66 RGNFAEDEEDLIIKLHALLGNR-WSLIAGRLP-GRTDNEVKNYWNSH 110 8999******************.*********.***********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.68 | 8 | 60 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.86E-28 | 11 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-13 | 12 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-14 | 13 | 60 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.8E-22 | 14 | 67 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.93E-10 | 15 | 60 | No hit | No description |
PROSITE profile | PS51294 | 26.297 | 61 | 115 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 65 | 113 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.1E-15 | 66 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.32E-10 | 68 | 111 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.0E-25 | 68 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MRKPSCDIKE LNKGAWSKQE DQKLVDYIKK HGEVCWRTLP QAAGLHRCGK SCRLRWINYL 60 RPDLKRGNFA EDEEDLIIKL HALLGNRWSL IAGRLPGRTD NEVKNYWNSH IRKKLISNGI 120 DPNNHRLNHT IPSVYQNPPM SDDSSKHFGM KDNNSKNETS KSPRVYNHGE VSDAASGEAE 180 SSCALPDLNL DLSICEKNLK PFHESKLSRK VPFDSPSTLL LFQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 8 | 115 | 2 | 108 | B-MYB |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, flowers and siliques. {ECO:0000269|PubMed:9839469}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, seed pods and flowers. {ECO:0000269|PubMed:1840903}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G013000.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT699108 | 1e-111 | KT699108.1 Trifolium repens MYB133 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003556646.1 | 1e-166 | transcription factor MYB3 | ||||
Refseq | XP_028221328.1 | 1e-166 | transcription factor MYB3-like | ||||
Swissprot | P81393 | 9e-73 | MYB08_ANTMA; Myb-related protein 308 | ||||
Swissprot | Q9S9K9 | 1e-72 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | A0A0B2RG93 | 1e-164 | A0A0B2RG93_GLYSO; Myb-related protein 308 | ||||
TrEMBL | K7N0Q3 | 1e-164 | K7N0Q3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G01610.2 | 1e-165 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF264 | 34 | 221 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 5e-75 | myb domain protein 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G013000.1.p |
Entrez Gene | 100818783 |