PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G006400.2.p | ||||||||
Common Name | GLYMA_20G006400, LOC100812180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 983aa MW: 108490 Da PI: 7.5819 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.1 | 1.7e-40 | 93 | 170 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Glyma.20G006400.2.p 93 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 170 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.4E-34 | 88 | 155 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 91 | 168 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.09E-37 | 92 | 172 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 8.8E-30 | 94 | 167 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 5.31E-6 | 729 | 876 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.2E-4 | 773 | 875 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.08E-5 | 776 | 875 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 983 aa Download sequence Send to blast |
MDQVAPPPIL MHRKRDLSYA VVSPAPNPSW SWDWDSVRFA GKPPPPLSSP NDDVVFEESV 60 APPLQLNLGG RTNNSNSNKR VRSGSPGTSS YPMCQVDNCR EDLSKAKDYH RRHKVCEAHS 120 KASKALLANQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSATPAP 180 AAAANLEIFD LLTAIAGASQ DLATKLLDAG SGNVNGKKDQ VQLQTPSSYQ RHESHDQLNH 240 TPAAPLTMDL LAVLSTTLSG GSAPDASASP SQNHSCNSDG GSADQTRQQQ FFSVGGERSS 300 SSSRSPVEDS DCQEDVRVNL PLQLFSSSPE DDSLPKLASS RKYFSSDSSN PAEERSPSSS 360 PVVEMLFDLQ GGARGLKPES ISSGREVIAN KEASQSHSSN ISLDLFKGSN NRIQQPSSLQ 420 SVPFQAGYTS SGSDHSPPSL NSDAQDRTGR IMFKLFDKHP SHFPGTLRAQ IYNWLSNRPS 480 DMESYIRPGC VVLSIYASMS SADWEKLEEN FLQHVHSLIQ NSDSDFWRNG RFLVHSGSQF 540 VSHKDGKIRI CKPWRTWKSP ELISVSPLAI VSGHETSISL KGRNLSTPGT KIHCTGTGSY 600 ASAEVIGSAY SGVMYDKIKL SAFKVQDVSH GVLGRCFIEV ENGFKGNSFP VIIADETICK 660 ELRPLESEFD EEEKICDAIS EEHEHHFGRP RSREEALHFL NELGWLFQRE RFSYVHEVPY 720 YSLDRFKFVL TFAVERNCCM LVKTLLDVLV GKHLQGEWLS TGSVEMLNAI QLLNRAVKGK 780 YVGMVDLLIH YSIPSKNGTS RKYVFPPNLE GPGGITPLHL AAGTSGSESV VDSLTSDPQE 840 IGLKCWESLV DANGQTPHAY AMMRNNDSYN ALVAHKLADR RRGEISVTIE NAIEQQSLRV 900 ELKEKQSNLV KRGQSSCAKC ANAEFRFNRR VPGSHGLLHR PFIYSMLAVA AVCVCVCVFF 960 RGRPFVGSVA PFSWENLDYG TM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 7e-33 | 84 | 167 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.50750 | 0.0 | cotyledon| flower| hypocotyl| root| seed coat| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G006400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235330 | 0.0 | AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006605456.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X2 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | A0A0R0EEL0 | 0.0 | A0A0R0EEL0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G00900.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G006400.2.p |
Entrez Gene | 100812180 |
Publications ? help Back to Top | |||
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