PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.20G006400.1.p | ||||||||
Common Name | GLYMA_20G006400, LOC100812180 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 1010aa MW: 111617 Da PI: 7.7673 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129 | 1.7e-40 | 93 | 170 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls+ak+yhrrhkvCe+hska+++l+++++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+ Glyma.20G006400.1.p 93 MCQVDNCREDLSKAKDYHRRHKVCEAHSKASKALLANQMQRFCQQCSRFHPLSEFDEGKRSCRRRLAGHNRRRRKTQP 170 6**************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-34 | 88 | 155 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.889 | 91 | 168 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.22E-37 | 92 | 172 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 9.1E-30 | 94 | 167 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF48403 | 5.47E-6 | 756 | 903 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.8E-4 | 800 | 902 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.27E-5 | 803 | 902 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1010 aa Download sequence Send to blast |
MDQVAPPPIL MHRKRDLSYA VVSPAPNPSW SWDWDSVRFA GKPPPPLSSP NDDVVFEESV 60 APPLQLNLGG RTNNSNSNKR VRSGSPGTSS YPMCQVDNCR EDLSKAKDYH RRHKVCEAHS 120 KASKALLANQ MQRFCQQCSR FHPLSEFDEG KRSCRRRLAG HNRRRRKTQP EDVTSATPAP 180 AAAANLEIFD LLTAIAGASQ GKFEEKRSQV PVREQLVQIL NRIPLPADLA TKLLDAGSGN 240 VNGKKDQVQL QTPSSYQRHE SHDQLNHTPA APLTMDLLAV LSTTLSGGSA PDASASPSQN 300 HSCNSDGGSA DQTRQQQFFS VGGERSSSSS RSPVEDSDCQ EDVRVNLPLQ LFSSSPEDDS 360 LPKLASSRKY FSSDSSNPAE ERSPSSSPVV EMLFDLQGGA RGLKPESISS GREVIANKEA 420 SQSHSSNISL DLFKGSNNRI QQPSSLQSVP FQAGYTSSGS DHSPPSLNSD AQDRTGRIMF 480 KLFDKHPSHF PGTLRAQIYN WLSNRPSDME SYIRPGCVVL SIYASMSSAD WEKLEENFLQ 540 HVHSLIQNSD SDFWRNGRFL VHSGSQFVSH KDGKIRICKP WRTWKSPELI SVSPLAIVSG 600 HETSISLKGR NLSTPGTKIH CTGTGSYASA EVIGSAYSGV MYDKIKLSAF KVQDVSHGVL 660 GRCFIEVENG FKGNSFPVII ADETICKELR PLESEFDEEE KICDAISEEH EHHFGRPRSR 720 EEALHFLNEL GWLFQRERFS YVHEVPYYSL DRFKFVLTFA VERNCCMLVK TLLDVLVGKH 780 LQGEWLSTGS VEMLNAIQLL NRAVKGKYVG MVDLLIHYSI PSKNGTSRKY VFPPNLEGPG 840 GITPLHLAAG TSGSESVVDS LTSDPQEIGL KCWESLVDAN GQTPHAYAMM RNNDSYNALV 900 AHKLADRRRG EISVTIENAI EQQSLRVELK EKQSNLVKRG QSSCAKCANA EFRFNRRVPG 960 SHGLLHRPFI YSMLAVAAVC VCVCVFFRGR PFVGSVAPFS WENLDYGTM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-33 | 84 | 167 | 1 | 84 | squamosa promoter binding protein-like 4 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.50750 | 0.0 | cotyledon| flower| hypocotyl| root| seed coat| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in vasculature of aerial parts. Expressed in cotyledons and leaf petioles. {ECO:0000269|PubMed:15703061}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May play a role in plant development. {ECO:0000250, ECO:0000269|PubMed:15703061}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00155 | DAP | Transfer from AT1G20980 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.20G006400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235330 | 0.0 | AC235330.1 Glycine max strain Williams 82 clone GM_WBb0082G12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003555217.1 | 0.0 | squamosa promoter-binding-like protein 14 isoform X1 | ||||
Swissprot | Q8RY95 | 0.0 | SPL14_ARATH; Squamosa promoter-binding-like protein 14 | ||||
TrEMBL | I1ND03 | 0.0 | I1ND03_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA20G00900.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9694 | 31 | 39 | Representative plant | OGRP7138 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20980.1 | 0.0 | squamosa promoter binding protein-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.20G006400.1.p |
Entrez Gene | 100812180 |
Publications ? help Back to Top | |||
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