PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.20G001900.1.p
Common NameGLYMA_20G001900, LOC100783876
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 246aa    MW: 28916.9 Da    PI: 7.0276
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.20G001900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.27.8e-27959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krien++ rqvtfskRr g+lKK +ELSvLCda++ +iifsstgk++e+++
  Glyma.20G001900.1.p  9 KRIENTTTRQVTFSKRRGGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCT 59
                         79***********************************************96 PP
2K-box58.23.5e-20901671693
                K-box  16 slqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          +  +++a L++++  L+ e+ ++lGed+  L++++L +Leq+Le+s+ +iR+++nell +q+e+l++ke+ l+een+ 
  Glyma.20G001900.1.p  90 EFFHNMAMLRQQTIRLELEIQRYLGEDMRGLQYEDLTKLEQELENSVARIRNRQNELLQQQMENLRRKERILEEENNH 167
                          55577899********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.9E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.081161IPR002100Transcription factor, MADS-box
CDDcd002652.50E-37272No hitNo description
SuperFamilySSF554551.06E-29286IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.5E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-263859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1886168IPR002487Transcription factor, K-box
PROSITE profilePS5129713.66488179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008360Biological Processregulation of cell shape
GO:0019252Biological Processstarch biosynthetic process
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0048316Biological Processseed development
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTTRQVT FSKRRGGLLK KTKELSVLCD AKIGIIIFSS TGKMREWCTE  60
PFRMEQIIEQ YQISKGTPIA ERGHDHPREE FFHNMAMLRQ QTIRLELEIQ RYLGEDMRGL  120
QYEDLTKLEQ ELENSVARIR NRQNELLQQQ MENLRRKERI LEEENNHFSN WEHHQAVLEF  180
QKAAATVEAS KPMYVMDHFS FFEEQPAGSI LQLASPMLPH FHPYLQLAQP NIQDSVRGQS  240
YNNEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-16171169MEF2C
5f28_B8e-16171169MEF2C
5f28_C8e-16171169MEF2C
5f28_D8e-16171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.20G001900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150433e-67AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003556596.20.0protein TRANSPARENT TESTA 16 isoform X1
RefseqXP_028219778.10.0protein TRANSPARENT TESTA 16-like
SwissprotQ9ATE55e-66FBP24_PETHY; MADS-box protein FBP24
TrEMBLK7N0I90.0K7N0I9_SOYBN; Uncharacterized protein
STRINGGLYMA20G00401.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49352952
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.23e-56MIKC_MADS family protein
Publications ? help Back to Top
  1. Tonaco IA,Borst JW,de Vries SC,Angenent GC,Immink RG
    In vivo imaging of MADS-box transcription factor interactions.
    J. Exp. Bot., 2006. 57(1): p. 33-42
    [PMID:16291798]